Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g056040.2.1 | Tomato | nucleus | 90.77 | 90.77 |
| AT1G43950.1 | Thale cress | nucleus | 10.92 | 31.98 |
| Bra029293.1-P | Field mustard | nucleus | 11.85 | 31.69 |
| CDX81024 | Canola | cytosol | 3.08 | 28.99 |
| PGSC0003DMT400071449 | Potato | nucleus | 14.15 | 25.48 |
| Zm00001d023704_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 10.0 | 23.13 |
| PGSC0003DMT400081282 | Potato | nucleus | 23.54 | 20.45 |
| Bra015374.1-P | Field mustard | nucleus | 13.08 | 19.72 |
| PGSC0003DMT400020874 | Potato | nucleus | 19.38 | 18.03 |
| PGSC0003DMT400055522 | Potato | nucleus | 19.08 | 17.92 |
| PGSC0003DMT400062489 | Potato | nucleus | 17.85 | 17.16 |
| PGSC0003DMT400045323 | Potato | cytosol | 2.77 | 6.72 |
Protein Annotations
| EntrezGene:102587577 | MapMan:15.5.5.1 | Gene3D:2.40.330.10 | InterPro:Auxin_resp | InterPro:B3_DNA-bd | ncoils:Coil |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M1C520 |
| PFAM:PF02362 | PFAM:PF06507 | EnsemblPlantsGene:PGSC0003DMG400023345 | PGSC:PGSC0003DMG400023345 | EnsemblPlants:PGSC0003DMT400059999 | PFscan:PS50863 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF17 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI00029481DE | RefSeq:XP_015163537.1 |
| SEG:seg | : | : | : | : | : |
Description
ARF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023345]
Coordinates
chr5:-:51546842..51552882
Molecular Weight (calculated)
74262.6 Da
IEP (calculated)
5.395
GRAVY (calculated)
-0.518
Length
650 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDQPWFSQQ KYPNHMSFEG DDGLRREIWK VCSGSSLDVP KAGERVYYFP RLHVEQLEQS SNQELIERLQ LSNLPPKMLC RVLHIRLLVE HETEEVYAEI
101: RLLPNQDQNE PTAPDFSPLD TPRPQFQSFC KCLTQSDIKS NWGLFVPLKD AVKCFPPLDM RQEKPSQELI ATDLQGNEWR FKHAYQGQPR RHSLTNGWST
201: FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQRCSIGAS TFSRQSVEGA LAVASHAFAT RSLFSVYHKP CYNKSSQFIM SLSKYFEGGN HGRGVGMISR
301: MQHEGEDSSH VRRTNDLDQI SLSQGQQTTN LMLEEDQYMQ DSEAVLDCAQ STMTDLEIRQ QTTGSHNNVH CFSPVEDNGL QLHTAVAREN NEGSIPNDTV
401: SIQTRDEDLY ELFEDFDFPD SINTSLDTIA LDLGSDWFRS TLQEQEETIT PSHPNASEDH SRRTSSVLEH PTSFQVMSIS TNPSQIPYEG PGRGDEQVPW
501: GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE ILAELVYFLN NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFIMESLRQ
601: RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNPPM RLHSVLEGLL
101: RLLPNQDQNE PTAPDFSPLD TPRPQFQSFC KCLTQSDIKS NWGLFVPLKD AVKCFPPLDM RQEKPSQELI ATDLQGNEWR FKHAYQGQPR RHSLTNGWST
201: FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQRCSIGAS TFSRQSVEGA LAVASHAFAT RSLFSVYHKP CYNKSSQFIM SLSKYFEGGN HGRGVGMISR
301: MQHEGEDSSH VRRTNDLDQI SLSQGQQTTN LMLEEDQYMQ DSEAVLDCAQ STMTDLEIRQ QTTGSHNNVH CFSPVEDNGL QLHTAVAREN NEGSIPNDTV
401: SIQTRDEDLY ELFEDFDFPD SINTSLDTIA LDLGSDWFRS TLQEQEETIT PSHPNASEDH SRRTSSVLEH PTSFQVMSIS TNPSQIPYEG PGRGDEQVPW
501: GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE ILAELVYFLN NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFIMESLRQ
601: RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNPPM RLHSVLEGLL
001: MANVEADFRT SGSNDDELYT ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVASTNQGVV DQEIPVFNLP PKILCRVLSV TLKAEHETDE VYAQITLQPE
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V
Arabidopsis Description
ARF11Auxin response factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.