Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G026750.1 | Barley | cytosol, nucleus, plastid | 24.63 | 34.02 |
| PGSC0003DMT400055522 | Potato | nucleus | 50.0 | 19.36 |
| PGSC0003DMT400020874 | Potato | nucleus | 34.33 | 13.16 |
| PGSC0003DMT400062489 | Potato | nucleus | 30.6 | 12.13 |
| Solyc11g013470.1.1 | Tomato | cytosol, nucleus, vacuole | 13.06 | 10.32 |
| PGSC0003DMT400081282 | Potato | nucleus | 12.69 | 4.55 |
| PGSC0003DMT400059999 | Potato | nucleus | 6.72 | 2.77 |
| PGSC0003DMT400071449 | Potato | nucleus | 0.75 | 0.55 |
| Zm00001d003011_P001 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045323 | EnsemblPlantsGene:PGSC0003DMG400017585 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF39 | PGSC:PGSC0003DMG400017585 | UniParc:UPI000295DB2D |
| UniProt:M1BHG9 | MapMan:35.1 | : | : | : | : |
Description
Auxin response factor ARF16 [Source:PGSC_GENE;Acc:PGSC0003DMG400017585]
Coordinates
chr10:+:52060667..52061765
Molecular Weight (calculated)
29941.9 Da
IEP (calculated)
6.845
GRAVY (calculated)
-0.701
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTIQFNPYT PPLKKLRLSH HSDFPLNGHL PMSGFPDNHL DPHLPMSSFP NHHLLRPNNT PAGMQGARHA PYNLSLPDIH TNKLQSSLSP VGFPSLYHVV
101: AIPSASNNTM IPKPSNKNDD VSSLLTLGSS TQNRQKFDCE KTTQFVLFGQ LIVIEQQTSQ SNSRNSVSPV VDVTNSFSDG NEYKKENTSD SSDTSFDHNS
201: VPHCLPSESF QSEKNVEIGH CKVFIESEDR EQTKQLSDES FREFTKAARR LTILMDGRSD NIRAREGV
101: AIPSASNNTM IPKPSNKNDD VSSLLTLGSS TQNRQKFDCE KTTQFVLFGQ LIVIEQQTSQ SNSRNSVSPV VDVTNSFSDG NEYKKENTSD SSDTSFDHNS
201: VPHCLPSESF QSEKNVEIGH CKVFIESEDR EQTKQLSDES FREFTKAARR LTILMDGRSD NIRAREGV
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.