Factsheet for PGSC0003DMT400081282

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400081282

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	PGSC0003DMT400081282	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g077560.2.1	Tomato	nucleus	95.59	95.72
Zm00001d053166_P001	Maize	nucleus	14.57	73.65
VIT_10s0003g00420.t01	Wine grape	nucleus	59.09	56.74
KRH21341	Soybean	nucleus	52.54	53.4
KRH50128	Soybean	nucleus	50.4	53.17
KRH20373	Soybean	nucleus	50.4	52.8
AT2G33860.1	Thale cress	nucleus	42.91	52.8
CDY17209	Canola	nucleus	42.25	52.49
Bra005465.1-P	Field mustard	nucleus	42.11	52.07
CDY37679	Canola	nucleus	41.31	52.02
Bra021885.1-P	Field mustard	nucleus	38.37	51.99
CDY27929	Canola	nucleus	41.71	51.32
GSMUA_Achr10P...	Banana	nucleus	38.1	49.57
GSMUA_Achr7P11000_001	Banana	nucleus	36.63	45.82
TraesCS3A01G246000.1	Wheat	nucleus	40.11	45.05
Os05t0563400-01	Rice	nucleus	42.51	44.66
Os01t0670800-02	Rice	nucleus	42.51	44.29
EES03412	Sorghum	nucleus	41.31	44.02
GSMUA_Achr4P10590_001	Banana	nucleus	41.71	43.7
TraesCS1B01G424700.1	Wheat	nucleus	43.32	43.67
Zm00001d043922_P001	Maize	nucleus	40.91	43.22
EES18676	Sorghum	nucleus	42.65	43.17
TraesCS1D01G404400.1	Wheat	nucleus	42.38	43.13
TraesCS3B01G273400.2	Wheat	nucleus	40.51	42.92
GSMUA_Achr4P02750_001	Banana	nucleus	41.04	42.76
TraesCS1A01G396400.1	Wheat	nucleus	41.71	42.45
TraesCS3B01G327000.1	Wheat	nucleus	37.43	42.42
TraesCS1B01G347900.2	Wheat	nucleus	39.44	42.26
TraesCS3A01G292400.1	Wheat	nucleus	36.76	42.11
GSMUA_Achr7P25330_001	Banana	nucleus	40.78	41.95
TraesCS1A01G334900.1	Wheat	nucleus	39.44	41.73
KXG22343	Sorghum	nucleus	37.57	41.57
TraesCS1D01G337400.1	Wheat	nucleus	38.77	41.55
Zm00001d038698_P001	Maize	nucleus	37.43	41.18
TraesCS3D01G292100.1	Wheat	plastid	38.1	41.13
TraesCS3D01G245400.2	Wheat	nucleus	40.91	40.96
Zm00001d039006_P007	Maize	nucleus	41.84	40.76
KXG33384	Sorghum	nucleus	37.17	40.58
HORVU3Hr1G072340.2	Barley	nucleus	36.76	40.56
HORVU1Hr1G076690.6	Barley	nucleus	37.7	40.46
Zm00001d012731_P010	Maize	nucleus	37.17	40.29
Zm00001d043431_P012	Maize	nucleus	36.9	39.88
Os01t0753500-01	Rice	plastid	38.9	39.81
Os05t0515400-01	Rice	nucleus	32.75	39.39
GSMUA_Achr3P31350_001	Banana	nucleus	41.18	38.84
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	42.51	37.19
Zm00001d006004_P001	Maize	nucleus	16.44	36.5
PGSC0003DMT400071449	Potato	nucleus	15.37	31.86
PGSC0003DMT400055522	Potato	nucleus	25.27	27.31
PGSC0003DMT400020874	Potato	nucleus	25.4	27.18
PGSC0003DMT400062489	Potato	nucleus	24.06	26.63
PGSC0003DMT400059999	Potato	nucleus	20.45	23.54
PGSC0003DMT400045323	Potato	cytosol	4.55	12.69

Protein Annotations

EntrezGene:102582172	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010050	GO:GO:0010158	GO:GO:0010582	GO:GO:0030154
InterPro:IPR003340	InterPro:IPR015300	UniProt:M1D4H7	PFAM:PF02362	PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400031769
PGSC:PGSC0003DMG400031769	EnsemblPlants:PGSC0003DMT400081282	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF5	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000295E3FD	RefSeq:XP_006364312.1	RefSeq:XP_006364313.1	SEG:seg	:

Description

Auxin response factor 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400031769]

Coordinates

chr2:+:33155271..33162521

Molecular Weight (calculated)

81688.5 Da

IEP (calculated)

7.807

GRAVY (calculated)

-0.383

Length

748 amino acids

Sequence
(BLAST)

001: MMCGLIDLNT VDNDDAGEET AAPVSLDSPA SSSVASGSSD LTSSTTPAVA SVCMELWHAC AGPLISLPKK GSAVVYLPQG HLEHLSEYPP IACNLPPHVF
101: CRVVDVKLQA DAATDEVYAQ VSLVPDNQQI EQKWKDGDID ADTEEEEIEG AGKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFAPLD YRQQRPSQEL
201: VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRTG DGELRLGVRR AAQAKTCSSY LARYSKPLNV SGIEDAVNVI SSRNVFNICY
301: NPRGNSSDFI VPYHKFSKTL AHPFSAGMRF KMRVETEDAA EQRFTGLVVG FSDVDPVRWP GSKWRCLLVR WDDLDVSRHN RVSPWEIEPS GSAPVSSSLV
401: MPSAKRTRVG FPISKADFPI PREGIAVSDF GESSRFQKVL QGQEILRMHA PYGGLDARSP RPAGIRCFPG FPSSGISRMG NSIRPLLGDT DKSHESIGFS
501: ESLRFNKVLQ GQEIFTSPPY GRAQAGIQMQ EKGRTGIFVG IQVPNHGNRW PAPNQDNNTR CKPINPVSAS SPPSALTFQH PSPPASKFQA MFNHKHGKHD
601: LGNQASLDMS ENCCRYLTSG SHTEDISRKE GTQGMSSFGF LKEQKQTGIS YLSLGTQSSF KGNQNLVSTC KTSCRIFGFP LTESKISATR AETPSEAVYS
701: LGLETTFLPS GDGKLQPGPP LVTNVVGTNF TKVNDLYAAR DVLLDIAL

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.