CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03412
EES18676
KXG22343
KXG33384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	EES03412	AT2G33860.1	24485461
AT2G33860.1	EES18676	AT2G33860.1	24485461
AT2G33860.1	KXG22343	AT2G33860.1	24485461
AT2G33860.1	KXG33384	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043922_P001	Maize	nucleus	89.89	89.12
Os01t0670800-02	Rice	nucleus	73.08	71.45
TraesCS3A01G246000.1	Wheat	nucleus	64.81	68.32
TraesCS3B01G273400.2	Wheat	nucleus	68.38	67.99
TraesCS3D01G245400.2	Wheat	nucleus	69.23	65.06
EES18676	Sorghum	nucleus	62.82	59.68
CDY37679	Canola	nucleus	40.17	47.47
Bra021885.1-P	Field mustard	nucleus	37.18	47.28
AT2G33860.1	Thale cress	nucleus	40.88	47.2
CDY27929	Canola	nucleus	40.17	46.38
CDY17209	Canola	nucleus	39.6	46.18
Bra005465.1-P	Field mustard	nucleus	39.74	46.12
GSMUA_Achr4P10590_001	Banana	nucleus	45.73	44.96
KRH50128	Soybean	nucleus	44.73	44.29
GSMUA_Achr4P02750_001	Banana	nucleus	44.87	43.87
KRH20373	Soybean	nucleus	44.3	43.56
KXG22343	Sorghum	nucleus	41.74	43.34
KRH21341	Soybean	nucleus	45.44	43.34
KXG33384	Sorghum	nucleus	42.17	43.21
VIT_10s0003g00420.t01	Wine grape	nucleus	46.15	41.59
PGSC0003DMT400081282	Potato	nucleus	44.02	41.31
GSMUA_Achr7P25330_001	Banana	nucleus	42.73	41.27
Solyc02g077560.2.1	Tomato	nucleus	43.73	41.1
GSMUA_Achr3P31350_001	Banana	nucleus	46.01	40.73
EES05458	Sorghum	nucleus	26.64	26.41
EER88840	Sorghum	nucleus	26.21	25.95
EES13156	Sorghum	nucleus	19.09	25.87
EER94066	Sorghum	nucleus	25.36	25.83
KXG26729	Sorghum	nucleus, plastid	24.5	23.82
KXG36152	Sorghum	nucleus	22.22	23.53

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5XG18
InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES03412	ProteinID:EES03412	ProteinID:EES03412.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF31	SMART:SM01019	EnsemblPlantsGene:SORBI_3003G251700	SUPFAM:SSF101936	UniParc:UPI0001A84AA0	RefSeq:XP_002458292.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:58976025..58980788

Molecular Weight (calculated)

77007.8 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.415

Length

702 amino acids

Sequence
(BLAST)

001: MAGIDLNTVE EEDEEEAEAE APPVAARAGG GAVCLELWHA CAGPVAPLPR KGSAVVYLPQ GHLEHIGGDA DAAGAAVPPH VLCRVVDVTL HADGATDEVY
101: ARVSLLPEDE EAERRARARV REDEDADRDG EDGAAMKPLA RTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ RPSQELVAKD LHGTEWKFRH
201: IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGEDGVL RLGVRRAAQL KIVTPIPALH NQCSSQTTLG NVAQAVATRT VFHIYYNPRL SQSEFIVPYW
301: KFTRSLNQPI SVGMRCRMRY ESDDASERRC TGIIIGSREA EPIWYGSKWK CLVVRWDDGI ECHWPNRVSP WEIEVTGSVS GSHMCAPNSK RLKPCLPQVN
401: PEIVLPNGSV SSDFAGSVRF HKVLQGQELL GLKTHDGTAI SAFQATEASN LQYSDERSNM SNNILGIPRL GVRSPNGIPG FPYHCSGFGE SQRFQKVLQG
501: QEVFRPFRGG CLADGHIRTA GMYQPKWPAP QGCDFPQPAK PVLVLQASSP SSVLMFPQTG SKITPLEYEY SCLDKDEDGR FDRTVPTQDM GRNNQTLSLW
601: PHLVSGEAIE ECTGTENMHS SVSGAEHESN NESTVENGCK IFGISLAEKI RSCDEADSCS AKRNSGLQPS RSQILGSCWA TVHEHRSVVG RVVDVSATDM
701: MI

Best Arabidopsis Sequence Match ( AT5G60450.2 )
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGSASSIYS ELWHACAGPL TCLPKKGNVV VYFPQGHLEQ DAMVSYSSPL EIPKFDLNPQ IVCRVVNVQL
101: LANKDTDEVY TQVTLLPLQE FSMLNGEGKE VKELGGEEER NGSSSVKRTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA PLDYKQQRPS QELIAKDLHG
201: VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RDEGGELRLG IRRAARPRNG LPDSIIEKNS CSNILSLVAN AVSTKSMFHV FYSPRATHAE
301: FVIPYEKYIT SIRSPVCIGT RFRMRFEMDD SPERRCAGVV TGVCDLDPYR WPNSKWRCLL VRWDESFVSD HQERVSPWEI DPSVSLPHLS IQSSPRPKRP
401: WAGLLDTTPP GNPITKRGGF LDFEESVRPS KVLQGQENIG SASPSQGFDV MNRRILDFAM QSHANPVLVS SRVKDRFGEF VDATGVNPAC SGVMDLDRFP
501: RVLQGQEICS LKSFPQFAGF SPAAAPNPFA YQANKSSYYP LALHGIRSTH VPYQNPYNAG NQSSGPPSRA INFGEETRKF DAQNEGGLPN NVTADLPFKI
601: DMMGKQKGSE LNMNASSGCK LFGFSLPVET PASKPQSSSK RICTKVHKQG SQVGRAIDLS RLNGYDDLLM ELERLFNMEG LLRDPEKGWR ILYTDSENDM
701: MVVGDDPWHD FCNVVWKIHL YTKEEVENAN DDNKSCLEQA ALMMEASKSS SVSQPDSSPT ITRV

Arabidopsis Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.