CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08767
CDY17209
CDY18679
CDY27929
CDY37679
CDY45607
CDY68170

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	CDY17209	AT2G33860.1	24485461
AT2G33860.1	CDY27929	AT2G33860.1	24485461
AT2G33860.1	CDY37679	AT2G33860.1	24485461
AT2G33860.1	CDY08767	AT5G65670.1	21734647
AT2G33860.1	CDY18679	AT5G65670.1	21734647
AT2G33860.1	CDY45607	AT5G65670.1	21734647
AT2G33860.1	CDY68170	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021885.1-P	Field mustard	nucleus	88.05	94.75
CDY27929	Canola	nucleus	87.71	85.69
CDY17209	Canola	nucleus	86.36	85.22
AT2G33860.1	Thale cress	nucleus	87.04	85.03
Zm00001d053166_P001	Maize	nucleus	18.86	75.68
CDX81024	Canola	cytosol	5.89	50.72
GSMUA_Achr10P...	Banana	nucleus	44.61	46.09
KRH20373	Soybean	nucleus	54.38	45.24
VIT_10s0003g00420.t01	Wine grape	nucleus	58.75	44.8
CDX83839	Canola	mitochondrion	7.91	44.76
KRH50128	Soybean	nucleus	53.2	44.57
KRH21341	Soybean	nucleus	54.38	43.89
GSMUA_Achr7P11000_001	Banana	nucleus	42.42	42.14
TraesCS3A01G246000.1	Wheat	nucleus	46.63	41.59
PGSC0003DMT400081282	Potato	nucleus	52.02	41.31
Os01t0670800-02	Rice	nucleus	49.83	41.23
Solyc02g077560.2.1	Tomato	nucleus	51.68	41.1
Os05t0563400-01	Rice	nucleus	48.99	40.87
EES03412	Sorghum	nucleus	47.47	40.17
Zm00001d043922_P001	Maize	nucleus	47.31	39.69
TraesCS1D01G404400.1	Wheat	nucleus	48.99	39.59
EES18676	Sorghum	nucleus	48.99	39.38
TraesCS1B01G424700.1	Wheat	nucleus	49.16	39.35
GSMUA_Achr4P02750_001	Banana	nucleus	47.47	39.28
TraesCS3A01G292400.1	Wheat	nucleus	43.1	39.2
TraesCS3B01G273400.2	Wheat	nucleus	46.46	39.09
GSMUA_Achr4P10590_001	Banana	nucleus	46.97	39.08
TraesCS1A01G396400.1	Wheat	nucleus	48.32	39.05
TraesCS3B01G327000.1	Wheat	nucleus	43.1	38.79
Zm00001d006004_P001	Maize	nucleus	21.89	38.58
HORVU1Hr1G076690.6	Barley	nucleus	44.11	37.59
TraesCS1D01G337400.1	Wheat	nucleus	44.11	37.54
TraesCS3D01G292100.1	Wheat	plastid	43.6	37.37
Zm00001d039006_P007	Maize	nucleus	48.32	37.37
HORVU3Hr1G072340.2	Barley	nucleus	42.59	37.32
TraesCS3D01G245400.2	Wheat	nucleus	46.63	37.08
TraesCS1A01G334900.1	Wheat	nucleus	44.11	37.06
TraesCS1B01G347900.2	Wheat	nucleus	43.43	36.96
GSMUA_Achr7P25330_001	Banana	nucleus	44.95	36.73
Zm00001d012731_P010	Maize	nucleus	42.42	36.52
KXG33384	Sorghum	nucleus	42.09	36.5
Zm00001d043431_P012	Maize	nucleus	42.42	36.42
KXG22343	Sorghum	nucleus	41.08	36.09
Os01t0753500-01	Rice	plastid	43.77	35.57
Os05t0515400-01	Rice	nucleus	37.21	35.53
Zm00001d038698_P001	Maize	nucleus	40.57	35.44
GSMUA_Achr3P31350_001	Banana	nucleus	46.46	34.8
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	48.82	33.92
CDY43553	Canola	nucleus	26.94	26.19
CDX68620	Canola	nucleus	26.94	25.93
CDX88392	Canola	nucleus	22.73	25.47
CDX68039	Canola	nucleus	22.73	24.77
CDY15734	Canola	nucleus	28.11	24.56
CDY04557	Canola	nucleus	28.28	24.53
CDX79239	Canola	nucleus	22.39	24.45
CDY46728	Canola	nucleus	26.6	18.72
CDY30172	Canola	nucleus	24.24	17.35

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	GO:A0A078HK54	UniProt:A0A078HK54	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EnsemblPlants:CDY37679	ProteinID:CDY37679	ProteinID:CDY37679.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00064571001	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EDE6CD
SEG:seg	:	:	:	:	:

Description

BnaA04g19890DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078HK54]

Coordinates

chrLK032406:+:60888..63623

Molecular Weight (calculated)

65581.7 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.481

Length

594 amino acids

Sequence
(BLAST)

001: MGGLIDLNVT EEEDETLSSA SGSLSPSNSS SSAFVANGSS SSSSSSSGVC LELWHACAGP LISLPKRGSL VLYFPQGHLE QQAPGFSAAI YGLPPHVFCR
101: ILDVKLHAET DTDEVYAQVS LLPESEDIER KVREGVDGGD QEDYEVLKRT NTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSKP RPSQELLARD
201: LHGLEWRFRH IYRGQPRRHL LTTGWSGFVN KKKLVSGDAV LFLRGDDGKL RLGVRRASQF EGASAFSTQY NQNTNHNNFS EVAHAISTNS AFNIYYNPKA
301: SWSNFIVPAK KFLKIVDYPF CIGMRFKARV ESEDASERRS LGIITGISDL DPIRWPGSKW RCLIVRWDDN EANRHQQRVS PWEIEPSGSI SSSSSFITAG
401: PKRSRIGFPD IPVSEGIHAT DFEESLRFQR VLQGQEKFQG FINTSSDGGA GARRGRFKGT EFGDSYGFHK VLQGQETVPV YSMTAHQQHG LSQRNIWCGP
501: FQNFSSRVLP PSSSPSSVLL TNSNGLNGGL EEHHGGSGSR CRLFGFPLRD ESTAMVVPCV EGQKGVSDVQ SNHHHHSQGR DMYGMRDMLL DIAL

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.