Factsheet for Zm00001d006004_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006004_P001
Zm00001d012731_P010
Zm00001d038698_P001
Zm00001d039006_P007
Zm00001d043431_P012
Zm00001d043922_P001
Zm00001d053166_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	Zm00001d006004_P001	AT2G33860.1	24485461
AT2G33860.1	Zm00001d012731_P010	AT2G33860.1	24485461
AT2G33860.1	Zm00001d038698_P001	AT2G33860.1	24485461
AT2G33860.1	Zm00001d039006_P007	AT2G33860.1	24485461
AT2G33860.1	Zm00001d043431_P012	AT2G33860.1	24485461
AT2G33860.1	Zm00001d043922_P001	AT2G33860.1	24485461
AT2G33860.1	Zm00001d053166_P001	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	40.95	93.24
Zm00001d003011_P001	Maize	nucleus	18.4	30.85
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	20.18	24.2
Bra021885.1-P	Field mustard	nucleus	39.17	23.91
EES18676	Sorghum	nucleus	51.04	23.27
Os05t0563400-01	Rice	nucleus	48.37	22.89
Zm00001d039006_P007	Maize	nucleus	51.04	22.4
TraesCS1D01G404400.1	Wheat	nucleus	48.07	22.04
TraesCS1B01G424700.1	Wheat	nucleus	48.37	21.97
TraesCS1A01G396400.1	Wheat	nucleus	47.77	21.9
CDY37679	Canola	nucleus	38.58	21.89
Zm00001d043922_P001	Maize	nucleus	45.4	21.61
CDY17209	Canola	nucleus	38.58	21.59
AT2G33860.1	Thale cress	nucleus	38.87	21.55
CDY27929	Canola	nucleus	38.87	21.55
Bra005465.1-P	Field mustard	nucleus	38.28	21.32
Zm00001d043431_P012	Maize	nucleus	38.87	18.93
Zm00001d012731_P010	Maize	nucleus	38.58	18.84
KRH50128	Soybean	nucleus	39.47	18.76
KRH20373	Soybean	nucleus	39.47	18.63
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	47.18	18.6
GSMUA_Achr4P02750_001	Banana	nucleus	39.47	18.52
GSMUA_Achr4P10590_001	Banana	nucleus	39.17	18.49
GSMUA_Achr7P25330_001	Banana	nucleus	39.47	18.29
Zm00001d038698_P001	Maize	nucleus	36.5	18.09
KRH21341	Soybean	nucleus	38.58	17.66
VIT_10s0003g00420.t01	Wine grape	nucleus	40.36	17.46
PGSC0003DMT400081282	Potato	nucleus	36.5	16.44
Solyc02g077560.2.1	Tomato	nucleus	35.91	16.2
GSMUA_Achr3P31350_001	Banana	nucleus	36.8	15.64
Zm00001d030803_P001	Maize	nucleus	15.73	15.59
Zm00001d026694_P001	Maize	nucleus	16.32	15.03
Zm00001d002929_P001	Maize	nucleus	21.07	13.84
Zm00001d026687_P001	Maize	nucleus	18.1	13.2
Zm00001d014013_P002	Maize	nucleus	24.93	13.04
Zm00001d025871_P001	Maize	nucleus	21.96	12.59
Zm00001d032683_P001	Maize	nucleus	24.33	12.04
Zm00001d051172_P001	Maize	nucleus	25.22	11.96
Zm00001d030801_P001	Maize	nucleus	15.73	11.88
Zm00001d017284_P001	Maize	nucleus	24.93	11.88
Zm00001d000358_P001	Maize	nucleus	24.04	11.57
Zm00001d014507_P002	Maize	nucleus	24.04	11.17

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.40.330.10	UniProt:A0A1D6ES18	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	ProteinID:ONM22531.1	PFAM:PF02362
PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0008458837
EnsemblPlantsGene:Zm00001d006004	EnsemblPlants:Zm00001d006004_P001	EnsemblPlants:Zm00001d006004_T001	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:195079115..195083151

Molecular Weight (calculated)

38482.5 Da

IEP (calculated)

10.704

GRAVY (calculated)

-0.674

Length

337 amino acids

Sequence
(BLAST)

001: MEDVLSLLPH VKKDNQDKVE SKQSKGNTLN KLLEFRSCFS CLSSRKERKG ESVRRKKSLK ADFVLPVETR RLEDIRAQHR TTARGKARSS RRQQEDVIDG
101: DLCEQYPSLL ADMQRKIADE LDRSPTPAAL LGEDCQGGRL EQARAALKIA YCCLPTPTTL TRLLPRARRE VKKPKKPKVK KPKVKQRFSW MPHMFCKTLM
201: ASDTSMHVGF SVLRRSAEDC FPPLDYSQQR SSQELVAKDL HGTEWRFRHI YRGQPHRHLL TTGWSAFVNK KLVSRDAVLF LRGDNGELRL GVRRAAQLKN
301: GSAFPALYNQ CSNLGSLPNV AHAVATKSVF HIYYNPR

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.