Factsheet for GSMUA_Achr7P25330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P31350_001
GSMUA_Achr4P02750_001
GSMUA_Achr4P10590_001
GSMUA_Achr7P11000_001
GSMUA_Achr7P25330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	GSMUA_Achr10P...	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr3P31350_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P02750_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P10590_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P11000_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P25330_001	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	15.27	75.0
GSMUA_Achr4P10590_001	Banana	nucleus	64.51	65.69
GSMUA_Achr4P02750_001	Banana	nucleus	61.9	62.67
GSMUA_Achr3P31350_001	Banana	nucleus	67.26	61.66
GSMUA_Achr10P...	Banana	nucleus	40.72	51.48
GSMUA_Achr7P11000_001	Banana	nucleus	40.03	48.66
AT2G33860.1	Thale cress	nucleus	39.34	47.04
CDY17209	Canola	nucleus	38.79	46.84
TraesCS3A01G246000.1	Wheat	nucleus	42.78	46.7
Bra005465.1-P	Field mustard	nucleus	38.79	46.61
CDY27929	Canola	nucleus	38.38	45.89
Bra021885.1-P	Field mustard	nucleus	34.8	45.83
CDY37679	Canola	nucleus	36.73	44.95
TraesCS3B01G273400.2	Wheat	nucleus	43.47	44.76
Os01t0670800-02	Rice	nucleus	43.47	44.01
Os05t0563400-01	Rice	nucleus	42.92	43.82
Zm00001d043922_P001	Maize	nucleus	42.37	43.5
EES18676	Sorghum	nucleus	44.15	43.44
VIT_10s0003g00420.t01	Wine grape	nucleus	46.49	43.39
KRH20373	Soybean	nucleus	42.5	43.28
KRH50128	Soybean	nucleus	42.09	43.16
TraesCS3D01G245400.2	Wheat	nucleus	44.15	42.97
EES03412	Sorghum	nucleus	41.27	42.73
KRH21341	Soybean	nucleus	43.05	42.53
Zm00001d039006_P007	Maize	nucleus	44.84	42.45
TraesCS1A01G396400.1	Wheat	nucleus	42.64	42.18
TraesCS1D01G404400.1	Wheat	nucleus	42.64	42.18
TraesCS1B01G424700.1	Wheat	nucleus	42.5	41.64
TraesCS3A01G292400.1	Wheat	nucleus	37.14	41.35
KXG33384	Sorghum	nucleus	38.93	41.31
TraesCS3B01G327000.1	Wheat	nucleus	37.14	40.91
Zm00001d038698_P001	Maize	nucleus	38.24	40.88
KXG22343	Sorghum	nucleus	37.96	40.83
PGSC0003DMT400081282	Potato	nucleus	41.95	40.78
TraesCS1B01G347900.2	Wheat	nucleus	39.06	40.69
TraesCS1A01G334900.1	Wheat	nucleus	39.48	40.59
TraesCS1D01G337400.1	Wheat	nucleus	38.93	40.54
Os05t0515400-01	Rice	nucleus	34.66	40.51
Solyc02g077560.2.1	Tomato	nucleus	41.54	40.43
Zm00001d043431_P012	Maize	nucleus	38.38	40.32
Zm00001d012731_P010	Maize	nucleus	38.24	40.29
HORVU3Hr1G072340.2	Barley	nucleus	37.55	40.27
TraesCS3D01G292100.1	Wheat	plastid	38.38	40.26
HORVU1Hr1G076690.6	Barley	nucleus	38.38	40.03
Zm00001d006004_P001	Maize	nucleus	18.29	39.47
Os01t0753500-01	Rice	plastid	37.55	37.35
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	41.82	35.56
GSMUA_Achr9P29480_001	Banana	nucleus	16.78	27.23
GSMUA_Achr11P...	Banana	nucleus	19.95	26.8
GSMUA_Achr11P...	Banana	nucleus	21.6	25.99
GSMUA_Achr8P18930_001	Banana	nucleus	20.08	25.48
GSMUA_Achr4P18240_001	Banana	nucleus	21.18	25.37
GSMUA_Achr5P03960_001	Banana	nucleus	19.12	24.87
GSMUA_Achr5P18540_001	Banana	nucleus	17.33	24.28
GSMUA_Achr5P14630_001	Banana	nucleus	18.29	24.14
GSMUA_Achr10P...	Banana	nucleus	15.82	23.0
GSMUA_Achr6P18900_001	Banana	plastid	12.38	21.9

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G25330_001	EnsemblPlants:GSMUA_Achr7P25330_001	EnsemblPlants:GSMUA_Achr7T25330_001	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0TKL9	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000294AFEA	SEG:seg	:

Description

Putative Auxin response factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G25330_001]

Coordinates

chr7:+:27009864..27019117

Molecular Weight (calculated)

79835.5 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.193

Length

727 amino acids

Sequence
(BLAST)

001: MCLLPNPAHH VASAVAAEEE ACRAASVCLE LWHACAGPRI WLPKKGSLVV YLPQGHLEHL RDGGGGRGRG GIGGYDVPPH VLCRVVDVKL HADAATDDVY
101: AQLSLVAENE VRLLLVPDFS LKKGEVEQNA EEENDESISK SLIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSQELITK DLHGTEWRFR
201: HIYRGQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGNDGM LRLGVRRAAQ FKNICPVSEH QSGNMNLAAF AVVANAVSDK NVFDIYYNPR VSSSEFIIPY
301: RKFVKSLSNS ISVGMRFKLL YEGDDATDRR STGLITGISD MDPVRWPGSK WRCLLVNWDD VVNANQQTRL SPWEIKPTCS VLSSGSLSTT GCKRAKVTLP
401: SVNMDFPIPN GNQCLDLRES ASFHKVLQGQ EFSRFRIPSS VGVLASHVSE VEKCQHSEGF SKSLGLHKVF QGQEVFSNHP PILGAHSDAD ARNGVYGLFD
501: GLHTFHAVSR LSTASLGYGT IVQPSSPSIQ ASSPSSVLMF QEASSKTSMV QPVPCRNGQD GGDGGSCFAN LTGMEALHRK EATLPIWPPI MGFHFANQQH
601: KMIEVHAPIL DNKLDTQNDQ NVSRNGCRLF GFSLTEKIPV ADSVGKPLPV SSTSTQVKLD AAFSTSVAQT PAKPVGCSCN GIKIWTLLPF NFFDLLMVCV
701: MFCYLKCHIF QCHKTIPTNA KSALRMF

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.