CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03412
EES18676
KXG22343
KXG33384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	EES03412	AT2G33860.1	24485461
AT2G33860.1	EES18676	AT2G33860.1	24485461
AT2G33860.1	KXG22343	AT2G33860.1	24485461
AT2G33860.1	KXG33384	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012731_P010	Maize	nucleus	91.97	91.3
Zm00001d043431_P012	Maize	nucleus	90.07	89.16
TraesCS3A01G292400.1	Wheat	nucleus	66.13	69.37
TraesCS3B01G327000.1	Wheat	nucleus	65.4	67.88
HORVU3Hr1G072340.2	Barley	nucleus	65.84	66.52
TraesCS3D01G292100.1	Wheat	plastid	67.01	66.23
Os01t0753500-01	Rice	plastid	69.49	65.12
KXG22343	Sorghum	nucleus	54.45	55.18
AT2G33860.1	Thale cress	nucleus	38.25	43.09
Bra021885.1-P	Field mustard	nucleus	34.31	42.57
CDY17209	Canola	nucleus	37.37	42.52
Bra005465.1-P	Field mustard	nucleus	37.37	42.31
CDY27929	Canola	nucleus	37.52	42.27
EES03412	Sorghum	nucleus	43.21	42.17
CDY37679	Canola	nucleus	36.5	42.09
GSMUA_Achr4P10590_001	Banana	nucleus	42.77	41.04
EES18676	Sorghum	nucleus	43.94	40.73
GSMUA_Achr4P02750_001	Banana	nucleus	41.9	39.97
KRH21341	Soybean	nucleus	42.04	39.13
GSMUA_Achr7P25330_001	Banana	nucleus	41.31	38.93
KRH20373	Soybean	nucleus	40.29	38.66
KRH50128	Soybean	nucleus	39.85	38.5
VIT_10s0003g00420.t01	Wine grape	nucleus	42.77	37.61
PGSC0003DMT400081282	Potato	nucleus	40.58	37.17
Solyc02g077560.2.1	Tomato	nucleus	40.44	37.08
GSMUA_Achr3P31350_001	Banana	nucleus	41.9	36.19
EES05458	Sorghum	nucleus	25.26	24.43
EES13156	Sorghum	nucleus	18.1	23.94
EER94066	Sorghum	nucleus	23.94	23.8
EER88840	Sorghum	nucleus	23.65	22.85
KXG36152	Sorghum	nucleus	21.9	22.62
KXG26729	Sorghum	nucleus, plastid	23.36	22.16

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A1B6Q638	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG33384
ProteinID:KXG33384	ProteinID:KXG33384.1	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF13	SMART:SM01019	EnsemblPlantsGene:SORBI_3003G298600	SUPFAM:SSF101936	UniParc:UPI0001C80B1E	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:62993604..62998675

Molecular Weight (calculated)

74382.1 Da

IEP (calculated)

7.172

GRAVY (calculated)

-0.364

Length

685 amino acids

Sequence
(BLAST)

001: MGIDLNMVGG EGHDRRPPPP VSRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGDVA ADLPPHVVCR VADVELCADA ATDEVYARLA LVAEGEAFGR
101: NLHGGGAEGD DDMEDLDAER KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGTKWKF RHIYRGQPRR HLLTTGWSSF
201: VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED FSSDSTKRHT LSAVADSLKH RSVFHISYNP RATASEYIIP YHKFLKSLNH PVCVGARINF
301: QCHNEDVSER RSGMVVRISE IDPMKWPGSK WRSLLVRWED GAECNGQDRV SPWEIEVAGG SVSVAHSLSA SSSKRTKLCA QGNLDVPTMY VTGNGCTDSV
401: ETGKLPRVLQ GQELMGFRTR HVPCAPQTAE AAKLQSSDAS RFLSNARDCA LSAPTSRLAV HNSGFTYQSV GFNESIGFSE VLQGQEISRA VPMFQGMMSE
501: ACSLKGGYGL HSYMHTPVAV NGLSAPAQEC CLTLSTPPGA QVPSLYPDNI FNRTVVPQLG LASKFGGGGT NGQQSGPFDR RREIWTKPQH ETPDQMNLDQ
601: FETRRASAPG DAGKLGSGGG EVRKTSCRLF GFSLTEKILP ADDDGVKEVS YEPECQNPRM LDLFGYNCST PSAALPALCA APIGM

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.