Factsheet for VIT_10s0003g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g00420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	VIT_10s0003g00420.t01	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	15.15	79.73
KRH20373	Soybean	nucleus	58.28	63.59
KRH50128	Soybean	nucleus	57.0	62.62
KRH21341	Soybean	nucleus	58.02	61.41
AT2G33860.1	Thale cress	nucleus	46.47	59.54
Bra005465.1-P	Field mustard	nucleus	46.21	59.5
CDY17209	Canola	nucleus	45.96	59.47
PGSC0003DMT400081282	Potato	nucleus	56.74	59.09
CDY27929	Canola	nucleus	46.08	59.05
CDY37679	Canola	nucleus	44.8	58.75
Bra021885.1-P	Field mustard	nucleus	41.59	58.7
Solyc02g077560.2.1	Tomato	nucleus	55.84	58.23
VIT_03s0167g00010.t01	Wine grape	nucleus	7.45	57.43
GSMUA_Achr10P...	Banana	nucleus	41.08	55.65
VIT_00s1203g00010.t01	Wine grape	cytosol	7.96	52.1
GSMUA_Achr7P11000_001	Banana	nucleus	38.13	49.67
Os05t0563400-01	Rice	nucleus	44.8	49.02
TraesCS3A01G246000.1	Wheat	nucleus	41.85	48.95
GSMUA_Achr4P10590_001	Banana	nucleus	44.54	48.6
Os01t0670800-02	Rice	nucleus	44.54	48.33
GSMUA_Achr4P02750_001	Banana	nucleus	44.16	47.91
EES18676	Sorghum	nucleus	44.8	47.23
TraesCS3B01G273400.2	Wheat	nucleus	42.36	46.74
TraesCS1D01G404400.1	Wheat	nucleus	44.03	46.67
TraesCS1B01G424700.1	Wheat	nucleus	44.42	46.63
GSMUA_Achr7P25330_001	Banana	nucleus	43.39	46.49
EES03412	Sorghum	nucleus	41.59	46.15
TraesCS1A01G396400.1	Wheat	nucleus	43.39	45.99
Zm00001d043922_P001	Maize	nucleus	41.72	45.9
Zm00001d039006_P007	Maize	nucleus	44.16	44.79
TraesCS3D01G245400.2	Wheat	nucleus	42.88	44.71
TraesCS3A01G292400.1	Wheat	nucleus	37.1	44.26
TraesCS3B01G327000.1	Wheat	nucleus	37.36	44.09
HORVU1Hr1G076690.6	Barley	nucleus	39.02	43.62
GSMUA_Achr3P31350_001	Banana	nucleus	44.16	43.38
HORVU3Hr1G072340.2	Barley	nucleus	37.61	43.22
TraesCS3D01G292100.1	Wheat	plastid	38.13	42.86
KXG33384	Sorghum	nucleus	37.61	42.77
TraesCS1A01G334900.1	Wheat	nucleus	38.64	42.57
TraesCS1B01G347900.2	Wheat	nucleus	38.0	42.41
Zm00001d012731_P010	Maize	nucleus	37.48	42.32
TraesCS1D01G337400.1	Wheat	nucleus	37.87	42.26
KXG22343	Sorghum	nucleus	36.59	42.16
Os05t0515400-01	Rice	nucleus	33.38	41.8
Zm00001d043431_P012	Maize	nucleus	37.1	41.76
Zm00001d038698_P001	Maize	nucleus	36.07	41.32
Os01t0753500-01	Rice	plastid	38.25	40.77
Zm00001d006004_P001	Maize	nucleus	17.46	40.36
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	43.77	39.88
VIT_08s0040g01810.t01	Wine grape	nucleus	24.26	30.34
VIT_06s0004g02750.t01	Wine grape	nucleus	27.47	30.1
VIT_13s0019g04380.t01	Wine grape	nucleus	25.55	29.31
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	9.24	20.75

Protein Annotations

EntrezGene:100245251	wikigene:100245251	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ProteinID:CCB55633	ProteinID:CCB55633.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6HM45	EMBL:FN595992
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010050	GO:GO:0010158	GO:GO:0010582	GO:GO:0030154	InterPro:IPR003340
InterPro:IPR015300	EntrezGene:LOC100245251	wikigene:LOC100245251	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PANTHER:PTHR31384	PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000210A15E	ArrayExpress:VIT_10s0003g00420
EnsemblPlantsGene:VIT_10s0003g00420	EnsemblPlants:VIT_10s0003g00420.t01	RefSeq:XP_002273401	RefSeq:XP_002273401.2	SEG:seg	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HM45]

Coordinates

chr10:-:1695104..1704519

Molecular Weight (calculated)

85139.3 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.345

Length

779 amino acids

Sequence
(BLAST)

001: MVAMIDLNTV DDDETPSSGS SSSSSSSASA SASTVCGSLL SAASSVCLEL WHACAGPLIS LPKKGSLVVY FPQGHLEQLS DYPAVAYDLP PHVFCRVVDV
101: KLHAEVVTDE VYAQVSLVPE TKIKQKLQEG EIEADGGEEE DIEGSIKSMT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP SQELVAKDLH
201: GFEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGGDGELRL GIRRAAQIKG SSPFPALCSQ QLNLNTLTAV VNAISTRSVF NICYNPRASS
301: SEFIIPLRKF SKSIDHSFSA GMRFKMRVET EDAAERRYTG LITGISDMDP VRWPGSKWRC LLVRWDDIEA NRHNRVSPWE IELSGSLSGS GSLTVPGSKR
401: TRIGLPGTRP DFSVPNGMGV SDFGESSRFQ KVLQGQEIFG FNTPYDGVDT QDHHPSEIRC FPGSSCSGIA AIGNGVRNPL GNSDISYKGI GFGESFRFHK
501: VLQGQETFPS PPCGRALSAN QAHENGSFGI FDGVQVPTSR NGWPALVQGY NAHTHLSTPS VQVSSPSSVL MFQQASTAAP NIYSMHSANN QEKEQEISNR
601: SSFDIPEVYG EKLTPSRCEL SVRGGGQGGM NFFGLLNEHN QLAVPHPLVT QSAFRGSQDL VPTCKSSCRL FGFSLTEERS IGNKVDNPTP VTSSLIPGTS
701: FLPQQLHSEP PVMTKAIGSN CTKVSDFYAD HEDVVMLVRD DSWHDMHLSL RPAFYSPKSG LAEIQNGNLQ HLMKNYDIY

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.