Factsheet for VIT_18s0001g04180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16623	Soybean	nucleus	46.11	41.45
KRH64757	Soybean	plastid	47.26	29.18
KRH18828	Soybean	nucleus	45.24	28.49
GSMUA_Achr6P18900_001	Banana	plastid	31.7	26.76
GSMUA_Achr9P29480_001	Banana	nucleus	34.01	26.34
Bra003665.1-P	Field mustard	nucleus	39.77	25.27
CDX79239	Canola	nucleus	39.19	25.0
CDX68039	Canola	nucleus	39.19	24.95
AT1G77850.2	Thale cress	nucleus	42.36	24.66
CDX88392	Canola	nucleus	36.31	23.77
Bra015651.1-P	Field mustard	nucleus	37.18	23.63
PGSC0003DMT400071449	Potato	nucleus	22.19	21.33
Solyc11g013480.1.1	Tomato	nucleus	19.88	20.18
GSMUA_Achr10P...	Banana	nucleus	28.24	19.6
HORVU2Hr1G125740.1	Barley	nucleus	21.9	19.54
VIT_13s0019g04380.t01	Wine grape	nucleus	35.45	18.11
VIT_08s0040g01810.t01	Wine grape	nucleus	31.99	17.82
VIT_06s0004g02750.t01	Wine grape	nucleus	35.16	17.16
TraesCS2D01G577800.1	Wheat	nucleus	25.07	16.96
TraesCS2A01G567300.1	Wheat	nucleus	25.07	16.89
EES13156	Sorghum	nucleus	23.34	15.64
Zm00001d002929_P001	Maize	nucleus	22.19	15.01
TraesCS7D01G463000.1	Wheat	nucleus	14.99	14.69
HORVU7Hr1G108360.1	Barley	nucleus	14.12	14.5
Os04t0690600-01	Rice	plastid	21.04	13.8
Zm00001d030801_P001	Maize	nucleus	17.0	13.23
Zm00001d026687_P001	Maize	nucleus	16.71	12.55
Zm00001d030803_P001	Maize	nucleus	11.82	12.06
TraesCS7A01G475700.1	Wheat	nucleus	12.68	11.86
TraesCS7A01G475600.1	Wheat	nucleus	12.68	11.76
Zm00001d026694_P001	Maize	nucleus	9.8	9.29
VIT_10s0003g00420.t01	Wine grape	nucleus	20.75	9.24
Os07t0183350-00	Rice	extracellular	15.85	7.22
Os07t0183700-00	Rice	mitochondrion	9.51	6.3
VIT_00s1203g00010.t01	Wine grape	cytosol	0.29	0.84
Os07t0183200-01	Rice	nucleus	0.58	0.49
Os07t0183100-00	Rice	nucleus	0.29	0.28
VIT_03s0167g00010.t01	Wine grape	nucleus	0.0	0.0
KRH16622	Soybean	mitochondrion	0.0	0.0

Protein Annotations

EntrezGene:100255673	wikigene:100255673	Gene3D:2.30.30.1040	MapMan:35.1	InterPro:Auxin_resp	ProteinID:CCB45532
ProteinID:CCB45532.1	UniProt:F6H0N5	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EntrezGene:LOC100255673
wikigene:LOC100255673	PFAM:PF06507	PANTHER:PTHR31384	PANTHER:PTHR31384:SF38	UniParc:UPI000210A931	ArrayExpress:VIT_18s0001g04180
EnsemblPlantsGene:VIT_18s0001g04180	EnsemblPlants:VIT_18s0001g04180.t01	RefSeq:XP_002284328	RefSeq:XP_002284328.2	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:3749619..3757678

Molecular Weight (calculated)

37852.6 Da

IEP (calculated)

5.082

GRAVY (calculated)

-0.292

Length

347 amino acids

Sequence
(BLAST)

001: MKRNSNSELF IGVRRDARWN RNGERWSFRS ALAGAVKAKE VGSIEGFSRS SSGRVRAEEV AVAAELAAQG MPFEVVYYPR VGSSDFVVKA EVVEEALSVF
101: WTGGMRVKMA METEDSSKTS LFQGTVSSAT VMDNGPWRGS LWRMLQVTWD EPEVLQNVMR VSPWQVELVM PTPPFHTTPP PAKRFRIAQS PELPSDGEGE
201: IFFPMADTVM GILNPSLLNH NTFPAGMQGA RQDSFYVSSL SNLTSENTHQ MCTINSLDDM ATKLNTVSTE LNIGSSLSDN LSPDSQGSVH FFGTKPVGNQ
301: DGNSSTKVGI HSFQLFGKVI HIKQPVEGNC SADGCTEDAV QVLEAGS

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.