CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16622	Soybean	mitochondrion	12.99	55.3
KRH18828	Soybean	nucleus	52.31	53.36
KRH16623	Soybean	nucleus	35.23	51.3
PGSC0003DMT400071449	Potato	nucleus	31.85	49.58
Solyc11g013480.1.1	Tomato	nucleus	29.89	49.12
GSMUA_Achr9P29480_001	Banana	nucleus	38.08	47.77
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	29.18	47.26
Bra003665.1-P	Field mustard	nucleus	45.91	47.25
CDX88392	Canola	nucleus	44.31	46.98
CDX68039	Canola	nucleus	45.37	46.79
Bra015651.1-P	Field mustard	nucleus	45.2	46.52
CDX79239	Canola	nucleus	45.02	46.51
AT1G77850.2	Thale cress	nucleus	46.09	43.46
KRH19870	Soybean	nucleus	38.26	41.83
GSMUA_Achr6P18900_001	Banana	plastid	29.18	39.9
KRH25669	Soybean	cytosol	7.65	38.39
GSMUA_Achr10P...	Banana	nucleus	33.1	37.2
TraesCS2A01G567300.1	Wheat	nucleus	31.85	34.76
TraesCS2D01G577800.1	Wheat	nucleus	31.67	34.7
EES13156	Sorghum	nucleus	31.14	33.78
Zm00001d002929_P001	Maize	nucleus	30.78	33.72
KRH10952	Soybean	nucleus	17.44	33.68
KRG91907	Soybean	nucleus	34.34	32.55
KRH22880	Soybean	nucleus	38.61	32.39
KRH32480	Soybean	nucleus	39.32	31.57
KRH34867	Soybean	nucleus	34.34	31.54
KRH26435	Soybean	nucleus	38.79	31.14
Zm00001d026687_P001	Maize	nucleus	25.27	30.74
Os04t0690600-01	Rice	plastid	28.83	30.62
KRH25023	Soybean	nucleus	38.08	30.53
KRG95987	Soybean	nucleus	37.9	30.43
Zm00001d030803_P001	Maize	nucleus	18.33	30.29
KRH29907	Soybean	nucleus	37.54	30.27
Zm00001d026694_P001	Maize	nucleus	18.68	28.69
HORVU7Hr1G108360.1	Barley	nucleus	16.37	27.22
Zm00001d030801_P001	Maize	nucleus	21.35	26.91
TraesCS7D01G463000.1	Wheat	nucleus	16.9	26.84
TraesCS7A01G475700.1	Wheat	nucleus	15.66	23.72
TraesCS7A01G475600.1	Wheat	nucleus	15.66	23.53
KRH50128	Soybean	nucleus	25.62	20.31
KRH20373	Soybean	nucleus	25.8	20.31
KRH21341	Soybean	nucleus	25.8	19.7
HORVU2Hr1G125740.1	Barley	nucleus	12.63	18.25
Os07t0183700-00	Rice	mitochondrion	15.48	16.6
Os07t0183350-00	Rice	extracellular	19.04	14.04
KRH10951	Soybean	cytosol, nucleus	8.01	10.51
Os07t0183100-00	Rice	nucleus	4.8	7.54
Os07t0183200-01	Rice	nucleus	1.42	1.97
KRH19868	Soybean	nucleus	0.18	1.12

Protein Annotations

EntrezGene:102662128	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	EMBL:ACUP02002772	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_04G254200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
UniProt:I1JZB4	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KRH64757	ProteinID:KRH64757	ProteinID:KRH64757.1
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF38	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI00023BFE83	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:52092532..52096886

Molecular Weight (calculated)

61213.2 Da

IEP (calculated)

5.521

GRAVY (calculated)

-0.265

Length

562 amino acids

Sequence
(BLAST)

001: MPRQPPPSPP SQPGVLDPAL WLVCAGTTVE IPTLHSRVYY FPQGHFDQAS SAPRNLSPLL LSKPAVLCRV ESVQFLADPL TDEVFAKLIL HPVADCFASG
101: PSAVAPAAAS ASAQTGENNV VSFSKVLTAS DANNGGGFSV PRFCADSIFP PLNFQADPPV QNLLVTDVHG FVWEFRHIYR GTPRRHLLTT GWSTFVNNKK
201: LVAGDVVVFM KNSGGGLFVG IRRATRFSMG KGGDRGGMRI RVDEEEEEEE EEEEEEEVRE VFSRDGRGKL SAKVVAEAAE LAARNMPFEV VYYPKERWSE
301: FVVKTEAVNE AMKVAWSPGI RVKIAAETDD SSRVSWCQGT VSSVALHGNG QWRGSLWRML QVTWDEPEGL QIAKWVSPWQ VELVSTTPAL HSAFPPIKRI
401: KAAHDSGVFT NGERDPFPMT GFTNSTMGQL NQALLSYGTF PAGMQGARHD AFSASRFCNY PTDMSRLCMG NSFGKSTFPW LKTLETEVNV GSSQSDELSP
501: DSRGSLQSCG TDLVGNSRKL GSVSFQLFGA VIQTEQPVEN GLQGTGCTCT GDECQCQRAL NS

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.