CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16623	Soybean	nucleus	64.61	92.23
KRH16622	Soybean	mitochondrion	21.78	90.91
KRH64757	Soybean	plastid	53.36	52.31
Solyc11g013480.1.1	Tomato	nucleus	31.58	50.88
PGSC0003DMT400071449	Potato	nucleus	32.85	50.14
Bra003665.1-P	Field mustard	nucleus	49.36	49.82
CDX79239	Canola	nucleus	49.18	49.82
CDX68039	Canola	nucleus	49.0	49.54
GSMUA_Achr9P29480_001	Banana	nucleus	38.84	47.77
CDX88392	Canola	nucleus	45.19	46.98
Bra015651.1-P	Field mustard	nucleus	45.19	45.6
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	28.49	45.24
AT1G77850.2	Thale cress	nucleus	48.09	44.46
GSMUA_Achr6P18900_001	Banana	plastid	31.03	41.61
KRH19870	Soybean	nucleus	37.21	39.88
KRH25669	Soybean	cytosol	7.62	37.5
KRH10952	Soybean	nucleus	19.42	36.77
GSMUA_Achr10P...	Banana	nucleus	31.94	35.2
KRG91907	Soybean	nucleus	37.21	34.57
TraesCS2A01G567300.1	Wheat	nucleus	31.76	33.98
TraesCS2D01G577800.1	Wheat	nucleus	31.58	33.92
KRH34867	Soybean	nucleus	37.39	33.66
EES13156	Sorghum	nucleus	31.03	33.01
Zm00001d002929_P001	Maize	nucleus	30.31	32.55
KRH22880	Soybean	nucleus	38.84	31.94
Os04t0690600-01	Rice	plastid	29.95	31.19
KRG95987	Soybean	nucleus	39.56	31.14
KRH32480	Soybean	nucleus	39.38	31.0
KRH26435	Soybean	nucleus	38.66	30.43
KRH29907	Soybean	nucleus	38.29	30.27
KRH25023	Soybean	nucleus	38.48	30.24
HORVU7Hr1G108360.1	Barley	nucleus	18.33	29.88
Zm00001d026687_P001	Maize	nucleus	24.68	29.44
Zm00001d026694_P001	Maize	nucleus	19.24	28.96
Zm00001d030803_P001	Maize	nucleus	17.24	27.94
TraesCS7D01G463000.1	Wheat	nucleus	17.79	27.68
Zm00001d030801_P001	Maize	nucleus	21.05	26.01
TraesCS7A01G475700.1	Wheat	nucleus	14.7	21.83
TraesCS7A01G475600.1	Wheat	nucleus	14.7	21.66
KRH50128	Soybean	nucleus	27.04	21.02
KRH21341	Soybean	nucleus	27.59	20.65
KRH20373	Soybean	nucleus	26.5	20.45
HORVU2Hr1G125740.1	Barley	nucleus	12.52	17.74
Os07t0183700-00	Rice	mitochondrion	15.24	16.03
Os07t0183350-00	Rice	extracellular	17.06	12.34
Os07t0183100-00	Rice	nucleus	6.72	10.34
KRH10951	Soybean	cytosol, nucleus	7.99	10.28
Os07t0183200-01	Rice	nucleus	1.09	1.47
KRH19868	Soybean	nucleus	0.18	1.12

Protein Annotations

EntrezGene:100805638	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	EMBL:ACUP02008135	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_13G084700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:I1LW27
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KRH18828	ProteinID:KRH18828	ProteinID:KRH18828.1	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000233BC5A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:19586384..19590900

Molecular Weight (calculated)

60681.0 Da

IEP (calculated)

6.121

GRAVY (calculated)

-0.386

Length

551 amino acids

Sequence
(BLAST)

001: MSPPQPSRVD PKIWRACAGA AVQIPKLHSR VYYFPQGHME HASPSHYLSP LIRSLPFVPC HVSSLDFLAD PFSDEVFAKF LLTPLSQSQQ QPFQNDTKEA
101: RNDDDDEDRE NNGVVSFAKI LTPSDANNGG GFSVPRFCAD SCFPPLDFRA DPPVQLLSVA DIHGVEWRFR HIYRGTPRRH LFTTGWSKFV NHKKLVAGDT
201: VVFVKDSDGI VSVGIRRAAR FAAAIETPPP AEREGFSRST TGRVTAEAVA AAAESAARNA PFEVVYYPRT GFADFVVSAE VVEESMKCAW VGGMRVKISM
301: ETEDSSRMTW YQGTVSSACA SENGPWRMLQ VNWDEPEVLQ NAKQVSPWQV ELVSPPFALH TVFSPNKRLR ADQGSGLLSN REQDPFFPMP GFSNSAMGHM
401: TGFPNSTVGQ MDKPLLSYES FPAGMQGARH DLYSPLSFSN FLNDNSYLYM GSGSFGNNPV QSLGTVTTEL NMSSSQSDDL SPHSQSSFHS FGTEFTGTRN
501: CDTKVGPGSI LLFGKIIQPA ESDLHDADCM ERDGSRGSNK LKTVEACYFS K

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.