Factsheet for PGSC0003DMT400071449

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013480.1.1	Tomato	nucleus	84.49	89.18
KRH16622	Soybean	mitochondrion	18.56	50.76
GSMUA_Achr9P29480_001	Banana	nucleus	43.49	35.04
KRH18828	Soybean	nucleus	50.14	32.85
Bra003665.1-P	Field mustard	nucleus	49.31	32.6
CDX68039	Canola	nucleus	49.03	32.48
CDX79239	Canola	nucleus	48.75	32.35
KRH64757	Soybean	plastid	49.58	31.85
CDX88392	Canola	nucleus	46.26	31.51
Bra015651.1-P	Field mustard	nucleus	46.81	30.95
AT1G77850.2	Thale cress	nucleus	50.42	30.54
Zm00001d030803_P001	Maize	nucleus	26.32	27.94
EES13156	Sorghum	nucleus	39.34	27.41
Zm00001d002929_P001	Maize	nucleus	38.5	27.1
Zm00001d026694_P001	Maize	nucleus	27.42	27.05
Zm00001d026687_P001	Maize	nucleus	34.35	26.84
TraesCS2A01G567300.1	Wheat	nucleus	37.95	26.6
TraesCS2D01G577800.1	Wheat	nucleus	37.67	26.51
GSMUA_Achr10P...	Banana	nucleus	36.57	26.4
GSMUA_Achr6P18900_001	Banana	plastid	29.92	26.28
KRH16623	Soybean	nucleus	26.04	24.35
Os04t0690600-01	Rice	plastid	35.46	24.2
PGSC0003DMT400020874	Potato	nucleus	45.98	23.75
HORVU7Hr1G108360.1	Barley	nucleus	22.16	23.67
PGSC0003DMT400055522	Potato	nucleus	44.04	22.98
TraesCS7D01G463000.1	Wheat	nucleus	22.44	22.88
PGSC0003DMT400062489	Potato	nucleus	42.38	22.63
Zm00001d030801_P001	Maize	nucleus	27.42	22.2
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	21.33	22.19
TraesCS7A01G475700.1	Wheat	nucleus	20.22	19.68
TraesCS7A01G475600.1	Wheat	nucleus	20.22	19.52
Os07t0183700-00	Rice	mitochondrion	26.04	17.94
PGSC0003DMT400081282	Potato	nucleus	31.86	15.37
PGSC0003DMT400059999	Potato	nucleus	25.48	14.15
Os07t0183350-00	Rice	extracellular	21.88	10.37
Os07t0183100-00	Rice	nucleus	8.59	8.66
HORVU2Hr1G125740.1	Barley	nucleus	9.14	8.48
PGSC0003DMT400045323	Potato	cytosol	0.55	0.75
Os07t0183200-01	Rice	nucleus	0.55	0.49

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1CNT2	PFAM:PF02362
PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400027798	PGSC:PGSC0003DMG400027798	EnsemblPlants:PGSC0003DMT400071449	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000294C419	SEG:seg	:

Description

Auxin response factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027798]

Coordinates

chr11:+:9698606..9700138

Molecular Weight (calculated)

40055.8 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.206

Length

361 amino acids

Sequence
(BLAST)

001: MQAPTASDRE VDPIVWRAIA GKSVQIPPVG SRVYYFPQGH AEHATFTSPG VLSPGIPAFI LCRVLSVRFL AESDTDEAFA KIFLHPISPS EVDEVTVSEE
101: EEVEDKIVSF VKILTPSDAN NGGGFSVPRF CADSIFPRLN FEAEPPVQNL SIRDIKGGVW EFRHIYRGTP RRHLLTTGWS KFVNSKQLVA GDSAVFMRRT
201: ANDQLYVGVR RAIKRNDNSQ KWTSSFLMRE HINSGGSPDV SWGIRKGRMT MEAVAAVAEM AARGVPFEVS CNPRDDWADF VVKAQAVEMA LNIPWTVGTR
301: VKMAVETEDS SRTACFQGTV SSVILTESGP WRGSPWRMLQ DRQVRVATEL VVGQRTALKQ L

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.