Factsheet for GSMUA_Achr6P18900_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P29480_001	Banana	nucleus	57.42	52.68
KRH16622	Soybean	mitochondrion	11.68	36.36
GSMUA_Achr10P...	Banana	nucleus	41.12	33.8
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	26.76	31.7
KRH16623	Soybean	nucleus	29.68	31.61
ATMG00940.1	Thale cress	cytosol	12.41	31.1
KRH18828	Soybean	nucleus	41.61	31.03
Solyc11g013480.1.1	Tomato	nucleus	25.79	30.99
PGSC0003DMT400071449	Potato	nucleus	26.28	29.92
CDX68039	Canola	nucleus	39.66	29.91
Bra003665.1-P	Field mustard	nucleus	39.66	29.85
CDX79239	Canola	nucleus	38.93	29.41
KRH64757	Soybean	plastid	39.9	29.18
CDX88392	Canola	nucleus	37.47	29.06
Bra015651.1-P	Field mustard	nucleus	37.96	28.57
AT1G77850.2	Thale cress	nucleus	39.66	27.35
GSMUA_Achr11P...	Banana	nucleus	35.04	26.62
GSMUA_Achr5P14630_001	Banana	nucleus	34.79	25.95
GSMUA_Achr5P03960_001	Banana	nucleus	35.28	25.94
GSMUA_Achr5P18540_001	Banana	nucleus	32.36	25.63
TraesCS2D01G577800.1	Wheat	nucleus	31.63	25.34
GSMUA_Achr8P18930_001	Banana	nucleus	35.28	25.31
TraesCS2A01G567300.1	Wheat	nucleus	31.14	24.85
Zm00001d030803_P001	Maize	nucleus	19.95	24.12
GSMUA_Achr4P18240_001	Banana	nucleus	35.04	23.72
Zm00001d002929_P001	Maize	nucleus	28.95	23.2
GSMUA_Achr11P...	Banana	nucleus	34.06	23.18
EES13156	Sorghum	nucleus	29.2	23.17
Os04t0690600-01	Rice	plastid	29.68	23.06
HORVU7Hr1G108360.1	Barley	nucleus	17.52	21.3
Zm00001d026687_P001	Maize	nucleus	23.6	21.0
Zm00001d030801_P001	Maize	nucleus	22.63	20.85
TraesCS7D01G463000.1	Wheat	nucleus	17.03	19.77
Zm00001d026694_P001	Maize	nucleus	17.52	19.67
TraesCS7A01G475700.1	Wheat	nucleus	16.3	18.06
HORVU2Hr1G125740.1	Barley	nucleus	17.03	17.99
TraesCS7A01G475600.1	Wheat	nucleus	16.3	17.91
GSMUA_Achr10P...	Banana	nucleus	21.9	15.65
GSMUA_Achr7P11000_001	Banana	nucleus	20.92	14.38
GSMUA_Achr4P02750_001	Banana	nucleus	22.38	12.81
GSMUA_Achr4P10590_001	Banana	nucleus	21.9	12.61
Os07t0183700-00	Rice	mitochondrion	16.06	12.6
GSMUA_Achr7P25330_001	Banana	nucleus	21.9	12.38
GSMUA_Achr3P31350_001	Banana	nucleus	18.73	9.71
Os07t0183350-00	Rice	extracellular	17.76	9.58
Os07t0183100-00	Rice	nucleus	6.81	7.82
Os07t0183200-01	Rice	nucleus	1.7	1.72

Protein Annotations

Gene3D:2.30.30.1040	MapMan:35.1	InterPro:Auxin_resp	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G18900_001	EnsemblPlants:GSMUA_Achr6P18900_001	EnsemblPlants:GSMUA_Achr6T18900_001	UniProt:M0T888	PFAM:PF06507
PANTHER:PTHR31384	PANTHER:PTHR31384:SF27	UniParc:UPI000296A768	SEG:seg	:	:

Description

Putative Auxin response factor 22 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18900_001]

Coordinates

chr6:+:13097702..13102735

Molecular Weight (calculated)

44464.6 Da

IEP (calculated)

6.168

GRAVY (calculated)

-0.181

Length

411 amino acids

Sequence
(BLAST)

001: MSADAAVSSP REVRSVDPQV WKACAGSSAR IPAIGSRACY FPQGHAEQAA SPPDFSALPA VPDVALCRIS AVRLLADTET DEVFSSISLD PRPSVALSPS
101: SDANNGGGFS FVNSKKLIAG DSVNFSGSVG FSRNVRGRVP AASVVEAVRL AGMGLPFEVL YYPRAGSPEF VVAEETVEAA MRVRWTSGMR VRMSLETEDS
201: ARMTWFQGTL SSLGMNDVEQ WPRSPWRMLK VNWDEPEVLQ NVKNVSPWQV DLVSVSSQIE TPFSVIRNFK MPENSEFLGN STGKTLQMTG TKSKSIGSVS
301: PFFSYIVPAG MQGARHDSIS IPHLCDSAIN RDKIFIDGPH GVSMLEKNDV SVDQRIGTTS LGGSSQPSQE SIQVLDRRIL ETRSNPVKKP STGSFQLFGQ
401: FYDAPLTGVL F

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.