Factsheet for GSMUA_Achr3P31350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P31350_001
GSMUA_Achr4P02750_001
GSMUA_Achr4P10590_001
GSMUA_Achr7P11000_001
GSMUA_Achr7P25330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	GSMUA_Achr10P...	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr3P31350_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P02750_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P10590_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P11000_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P25330_001	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	13.87	74.32
GSMUA_Achr4P10590_001	Banana	nucleus	61.54	68.35
GSMUA_Achr7P25330_001	Banana	nucleus	61.66	67.26
GSMUA_Achr4P02750_001	Banana	nucleus	58.76	64.9
GSMUA_Achr10P...	Banana	nucleus	35.44	48.87
TraesCS3A01G246000.1	Wheat	nucleus	40.86	48.65
CDY17209	Canola	nucleus	36.19	47.67
Bra005465.1-P	Field mustard	nucleus	36.19	47.44
TraesCS3B01G273400.2	Wheat	nucleus	41.99	47.17
AT2G33860.1	Thale cress	nucleus	35.81	46.71
CDY27929	Canola	nucleus	35.69	46.55
Os01t0670800-02	Rice	nucleus	42.12	46.52
Os05t0563400-01	Rice	nucleus	41.74	46.49
CDY37679	Canola	nucleus	34.8	46.46
Bra021885.1-P	Field mustard	nucleus	32.16	46.2
GSMUA_Achr7P11000_001	Banana	nucleus	34.8	46.15
EES03412	Sorghum	nucleus	40.73	46.01
Zm00001d043922_P001	Maize	nucleus	40.48	45.34
EES18676	Sorghum	nucleus	42.24	45.33
TraesCS3A01G292400.1	Wheat	nucleus	37.33	45.33
TraesCS3D01G245400.2	Wheat	nucleus	42.62	45.25
TraesCS3B01G327000.1	Wheat	nucleus	37.2	44.7
VIT_10s0003g00420.t01	Wine grape	nucleus	43.38	44.16
HORVU3Hr1G072340.2	Barley	nucleus	37.58	43.95
TraesCS1D01G404400.1	Wheat	nucleus	40.73	43.95
KRH20373	Soybean	nucleus	39.47	43.84
TraesCS1B01G424700.1	Wheat	nucleus	40.98	43.8
Zm00001d039006_P007	Maize	nucleus	42.37	43.75
TraesCS3D01G292100.1	Wheat	plastid	38.21	43.72
TraesCS1A01G396400.1	Wheat	nucleus	40.48	43.67
KRH21341	Soybean	nucleus	40.35	43.48
KRH50128	Soybean	nucleus	38.59	43.16
TraesCS1B01G347900.2	Wheat	nucleus	37.83	42.98
KXG22343	Sorghum	nucleus	36.57	42.9
Os05t0515400-01	Rice	nucleus	33.42	42.6
HORVU1Hr1G076690.6	Barley	nucleus	37.33	42.47
Zm00001d038698_P001	Maize	nucleus	36.19	42.21
TraesCS1A01G334900.1	Wheat	nucleus	37.45	42.01
KXG33384	Sorghum	nucleus	36.19	41.9
TraesCS1D01G337400.1	Wheat	nucleus	36.57	41.55
Zm00001d012731_P010	Maize	nucleus	36.07	41.45
Solyc02g077560.2.1	Tomato	nucleus	38.97	41.37
PGSC0003DMT400081282	Potato	nucleus	38.84	41.18
Zm00001d043431_P012	Maize	nucleus	35.81	41.04
Os01t0753500-01	Rice	plastid	37.45	40.63
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	41.99	38.95
Zm00001d006004_P001	Maize	nucleus	15.64	36.8
GSMUA_Achr11P...	Banana	nucleus	17.91	26.25
GSMUA_Achr11P...	Banana	nucleus	19.42	25.5
GSMUA_Achr4P18240_001	Banana	nucleus	19.29	25.21
GSMUA_Achr8P18930_001	Banana	nucleus	18.03	24.96
GSMUA_Achr9P29480_001	Banana	nucleus	13.75	24.33
GSMUA_Achr5P14630_001	Banana	nucleus	16.14	23.23
GSMUA_Achr5P18540_001	Banana	nucleus	15.13	23.12
GSMUA_Achr5P03960_001	Banana	nucleus	16.14	22.9
GSMUA_Achr10P...	Banana	nucleus	13.11	20.8
GSMUA_Achr6P18900_001	Banana	plastid	9.71	18.73

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G31350_001	EnsemblPlants:GSMUA_Achr3P31350_001	EnsemblPlants:GSMUA_Achr3T31350_001	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0SJE9	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000295A406	SEG:seg	:

Description

Putative Auxin response factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G31350_001]

Coordinates

chr3:-:29683958..29691079

Molecular Weight (calculated)

85855.0 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.300

Length

793 amino acids

Sequence
(BLAST)

001: MGGDKPGHCD DQSSPDFSLS LPHLPSDSCI DTEPAAARER ERERNPTPIS PSPTSGSSLS WICLSVLGLL GSLGLGRMGI DLNTIEEEEE EPEQHPAHLA
101: VSAAAAAEEA FQSASVCLEL WHAEGGDGSG GRGGVGSGYD VPPHVFCRVV DVKLHADAAT DEVYAQLSLV VESEEFEGRP KKGELEGDAE EEDVECISRT
201: SIPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHSMEWRFRH IYRGQPRRHL LTTGWSAFVN RKKLSSGDAV LFLRGNDGVL
301: RLGVRRAAQF KGSGPVLEHQ SGNMNLLTLA AVADAVSNKK AFDIYYNPRA SSSEFIVPYW KFVKSLNTSI SAGMRFKILY EGDDATERRS TGLITGISDM
401: DPVRWPGSKW KCLLVNWDDD MDANRQNRIS PWEIEPIGSV LGSGSLSTTG SKRAKICLPS VNMDFPIPNG NGCLDLRESA SFHKVLQGQE FTRLRTPSNI
501: GVTASHVSEI GNRQYSDGKG RCTGANSCIV GESVTRDRVR TSYGADFSFN CTGFSEPVLF QKVLQGQEVF SKCPPFIGAR SDAHARNGVY GLFDRFHTSH
601: AESRLPPSSL GYVTIVQPSL PPIQASSPSS VLMFQEAGSR MSLVQSASST NGQDRGDGGC YFSKLNGSEA LHQPEMDKVH ASVSDGKLGI GNEQNVNRNG
701: CRLFGFSLTE KIPVANLADK SLPVSPASTQ VKVDTAFSAS MPQMPAKPVG CSCTGVNAVY ALYIFPFGCS NSSLLFVTFC YLTSLCCNIF SVC

Best Arabidopsis Sequence Match ( AT2G33860.2 )
(BLAST)

001: MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQPRPSQ ELLARDLHGL EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGKLRLGV
101: RRASQIEGTA ALSAQYNQNM NHNNFSEVAH AISTHSVFSI SYNPKASWSN FIIPAPKFLK VVDYPFCIGM RFKARVESED ASERRSPGII SGISDLDPIR
201: WPGSKWRCLL VRWDDIVANG HQQRVSPWEI EPSGSISNSG SFVTTGPKRS RIGFSSGKPD IPVSEGIRAT DFEESLRFQR VLQGQEIFPG FINTCSDGGA
301: GARRGRFKGT EFGDSYGFHK VLQGQETVPA YSITDHRQQH GLSQRNIWCG PFQNFSTRIL PPSVSSSPSS VLLTNSNSPN GRLEDHHGGS GRCRLFGFPL
401: TDETTAVASA TAVPCVEGNS MKGASAVQSN HHHSQGRDIY AMRDMLLDIA L

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.