Factsheet for Zm00001d039006_P007

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006004_P001
Zm00001d012731_P010
Zm00001d038698_P001
Zm00001d039006_P007
Zm00001d043431_P012
Zm00001d043922_P001
Zm00001d053166_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	Zm00001d006004_P001	AT2G33860.1	24485461
AT2G33860.1	Zm00001d012731_P010	AT2G33860.1	24485461
AT2G33860.1	Zm00001d038698_P001	AT2G33860.1	24485461
AT2G33860.1	Zm00001d039006_P007	AT2G33860.1	24485461
AT2G33860.1	Zm00001d043431_P012	AT2G33860.1	24485461
AT2G33860.1	Zm00001d043922_P001	AT2G33860.1	24485461
AT2G33860.1	Zm00001d053166_P001	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	18.49	95.95
EES18676	Sorghum	nucleus	86.85	90.26
Os05t0563400-01	Rice	nucleus	69.4	74.86
TraesCS1D01G404400.1	Wheat	nucleus	68.49	71.56
TraesCS1B01G424700.1	Wheat	nucleus	69.14	71.56
TraesCS1A01G396400.1	Wheat	nucleus	67.84	70.88
Zm00001d043922_P001	Maize	nucleus	57.03	61.86
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	66.15	59.42
Zm00001d006004_P001	Maize	nucleus	22.4	51.04
CDY17209	Canola	nucleus	38.54	49.17
Bra005465.1-P	Field mustard	nucleus	38.67	49.09
CDY27929	Canola	nucleus	38.41	48.52
CDY37679	Canola	nucleus	37.37	48.32
Bra021885.1-P	Field mustard	nucleus	34.64	48.19
AT2G33860.1	Thale cress	nucleus	38.02	48.03
KRH50128	Soybean	nucleus	42.58	46.12
GSMUA_Achr4P10590_001	Banana	nucleus	42.84	46.08
KRH21341	Soybean	nucleus	43.23	45.11
KRH20373	Soybean	nucleus	41.93	45.1
GSMUA_Achr4P02750_001	Banana	nucleus	42.06	44.99
GSMUA_Achr7P25330_001	Banana	nucleus	42.45	44.84
VIT_10s0003g00420.t01	Wine grape	nucleus	44.79	44.16
Zm00001d038698_P001	Maize	nucleus	38.41	43.38
Zm00001d043431_P012	Maize	nucleus	38.28	42.49
Zm00001d012731_P010	Maize	nucleus	38.15	42.46
GSMUA_Achr3P31350_001	Banana	nucleus	43.75	42.37
PGSC0003DMT400081282	Potato	nucleus	40.76	41.84
Solyc02g077560.2.1	Tomato	nucleus	39.97	41.1
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	12.37	33.81
Zm00001d003011_P001	Maize	nucleus	8.72	33.33
Zm00001d014013_P002	Maize	nucleus	23.31	27.8
Zm00001d032683_P001	Maize	nucleus	23.7	26.73
Zm00001d030803_P001	Maize	nucleus	11.72	26.47
Zm00001d000358_P001	Maize	nucleus	24.09	26.43
Zm00001d017284_P001	Maize	nucleus	23.7	25.74
Zm00001d025871_P001	Maize	nucleus	19.66	25.68
Zm00001d014507_P002	Maize	nucleus	24.22	25.66
Zm00001d051172_P001	Maize	nucleus	23.44	25.32
Zm00001d002929_P001	Maize	nucleus	16.67	24.95
Zm00001d026694_P001	Maize	nucleus	11.85	24.86
Zm00001d026687_P001	Maize	nucleus	14.45	24.03
Zm00001d030801_P001	Maize	nucleus	12.76	21.97

Protein Annotations

EntrezGene:103630727	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A1D6MCU5	ProteinID:AQK88500.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF31
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00084235FC	EnsemblPlantsGene:Zm00001d039006	EnsemblPlants:Zm00001d039006_P007	EnsemblPlants:Zm00001d039006_T007
SEG:seg	:	:	:	:	:

Description

ARF-transcription factor 24Auxin response factor 3

Coordinates

chr6:+:168658932..168663801

Molecular Weight (calculated)

83975.3 Da

IEP (calculated)

8.285

GRAVY (calculated)

-0.427

Length

768 amino acids

Sequence
(BLAST)

001: MAGIDLNDTV EEDEEEAEPG NACSQQSRTS SAATFPPPPP NQPRPSAAVC LELWHACAGP VAPLPRKGSV VVYLPQGHIE HLGDAAAAGG GAPPPVALPP
101: HVFCRVVDVT LHVRAPVPTQ CVRVWIARAG VRLPLTLSLL RSLQADASTD EVYAQLALVA ENEDVARRLR GRSEDGSAED GDEGETVKQR FSRMPHMFCK
201: TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QQRPSQELVA KDLHGTEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGDNG ELRLGVRRAA
301: QLKNGSAFPA LYNQCLNLGS LPNVAHAVAT KSVFHIYYNP RLSQSEFIIP FSKFIKSFSQ PFSAGSRFKV KYESDDASER RCTGIIAGIG DADPMWRGSK
401: WKCLMVRWDD DVDFRQPNRI SPWEIELTSS VSGSHMSAPN AKRLKPCLPH VNPDYLVPNG SGRPDFAESA QFHKVLQGQE LLGYRTHDNA AVATSQPCEA
501: TNMQYIDERS CSNDASNIIP GVPRIGVRTP LGSPRFSYRC SGFGESPRFQ KVLQGQEVFH PYRGTLVDAS LSNSGFHQQD GSHVPTQASK WHAQLHGCAF
601: RGQQAPAVPS QSSSPPSVLM FQRGDPKMSP FEFGHFHVNK KEDRRAMFVH AGGIGGTEQT TMLQAHHVSG GTGNRDVTVE KSHPAVAAAS DNREVSKNSC
701: KIFGISLTEK VPAMKEKGCG DINTNYPSPF LSLKQQVPKS LGNSCATVHE QRPVVARVID VSTVDMMI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.