Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17209 | Canola | nucleus | 96.71 | 97.67 |
| CDY37679 | Canola | nucleus | 85.69 | 87.71 |
| AT2G33860.1 | Thale cress | nucleus | 87.01 | 87.01 |
| Zm00001d053166_P001 | Maize | nucleus | 18.59 | 76.35 |
| CDX81024 | Canola | cytosol | 5.76 | 50.72 |
| GSMUA_Achr10P... | Banana | nucleus | 44.24 | 46.78 |
| VIT_10s0003g00420.t01 | Wine grape | nucleus | 59.05 | 46.08 |
| KRH20373 | Soybean | nucleus | 53.78 | 45.8 |
| KRH50128 | Soybean | nucleus | 52.47 | 44.99 |
| KRH21341 | Soybean | nucleus | 53.78 | 44.43 |
| GSMUA_Achr7P11000_001 | Banana | nucleus | 42.43 | 43.14 |
| CDX83839 | Canola | mitochondrion | 7.4 | 42.86 |
| PGSC0003DMT400081282 | Potato | nucleus | 51.32 | 41.71 |
| Solyc02g077560.2.1 | Tomato | nucleus | 50.99 | 41.5 |
| Os05t0563400-01 | Rice | nucleus | 48.19 | 41.15 |
| TraesCS3A01G246000.1 | Wheat | nucleus | 45.07 | 41.14 |
| Os01t0670800-02 | Rice | nucleus | 48.36 | 40.95 |
| EES18676 | Sorghum | nucleus | 49.01 | 40.32 |
| TraesCS1D01G404400.1 | Wheat | nucleus | 48.68 | 40.27 |
| EES03412 | Sorghum | nucleus | 46.38 | 40.17 |
| TraesCS1B01G424700.1 | Wheat | nucleus | 48.85 | 40.03 |
| TraesCS3A01G292400.1 | Wheat | nucleus | 42.93 | 39.97 |
| GSMUA_Achr4P02750_001 | Banana | nucleus | 47.04 | 39.83 |
| TraesCS1A01G396400.1 | Wheat | nucleus | 47.86 | 39.59 |
| GSMUA_Achr4P10590_001 | Banana | nucleus | 46.38 | 39.5 |
| Zm00001d043922_P001 | Maize | nucleus | 45.89 | 39.41 |
| TraesCS3B01G327000.1 | Wheat | nucleus | 42.43 | 39.09 |
| Zm00001d006004_P001 | Maize | nucleus | 21.55 | 38.87 |
| TraesCS3B01G273400.2 | Wheat | nucleus | 45.07 | 38.81 |
| Zm00001d039006_P007 | Maize | nucleus | 48.52 | 38.41 |
| GSMUA_Achr7P25330_001 | Banana | nucleus | 45.89 | 38.38 |
| TraesCS3D01G292100.1 | Wheat | plastid | 43.59 | 38.24 |
| HORVU3Hr1G072340.2 | Barley | nucleus | 42.6 | 38.2 |
| Zm00001d043431_P012 | Maize | nucleus | 42.93 | 37.72 |
| Zm00001d012731_P010 | Maize | nucleus | 42.6 | 37.54 |
| KXG33384 | Sorghum | nucleus | 42.27 | 37.52 |
| HORVU1Hr1G076690.6 | Barley | nucleus | 42.93 | 37.45 |
| TraesCS1D01G337400.1 | Wheat | nucleus | 42.6 | 37.11 |
| TraesCS1A01G334900.1 | Wheat | nucleus | 42.76 | 36.78 |
| TraesCS3D01G245400.2 | Wheat | nucleus | 45.07 | 36.68 |
| TraesCS1B01G347900.2 | Wheat | nucleus | 42.11 | 36.68 |
| KXG22343 | Sorghum | nucleus | 40.46 | 36.39 |
| Os01t0753500-01 | Rice | plastid | 43.26 | 35.98 |
| GSMUA_Achr3P31350_001 | Banana | nucleus | 46.55 | 35.69 |
| Zm00001d038698_P001 | Maize | nucleus | 39.64 | 35.44 |
| Os05t0515400-01 | Rice | nucleus | 36.18 | 35.37 |
| HORVU1Hr1G087460.6 | Barley | mitochondrion, nucleus | 48.85 | 34.74 |
| CDY43553 | Canola | nucleus | 25.82 | 25.7 |
| CDX68620 | Canola | nucleus | 25.66 | 25.28 |
| CDX88392 | Canola | nucleus | 21.88 | 25.09 |
| CDX68039 | Canola | nucleus | 22.2 | 24.77 |
| CDY15734 | Canola | nucleus | 27.63 | 24.71 |
| CDY04557 | Canola | nucleus | 27.8 | 24.67 |
| CDX79239 | Canola | nucleus | 21.88 | 24.45 |
| CDY46728 | Canola | nucleus | 25.66 | 18.48 |
| CDY30172 | Canola | nucleus | 23.36 | 17.11 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | GO:A0A078GRX5 | UniProt:A0A078GRX5 | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | EnsemblPlants:CDY27929 | ProteinID:CDY27929 | ProteinID:CDY27929.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00038829001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF5 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EEB897 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng05140DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078GRX5]
Coordinates
chrLK032212:+:286583..289510
Molecular Weight (calculated)
66691.3 Da
IEP (calculated)
7.055
GRAVY (calculated)
-0.426
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLIDLNVT EEQEEETTPS SGSGSLSPCD SSSSASAFGV SGSSSRSSSS GVCLELWHAC AGPLISLPKR GSLVLYFPQG HLEQAPDFSA AIYGLPPHVF
101: CRILDVKLHA ETATDEVYAQ VSLLPESEDI ERKVREEVID VDGGEEDYVV LKRTNTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YTQPRPSQEL
201: LARDLHGLEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD DGKLRLGVRR ASQIEGASAF SSQYNQNMNH NNFAEVAHAI STNSAFNIYY
301: NPKASWSNFI IPAPKFLKTV DYPFCIGMRF KARVESEDAS ERRSPGIITG INDLDPIRWP GSKWRCLLVR WDDIEANGHR QQRISPWEIE PSGSISSSGS
401: FITTGPKRSR IGFSSGKPDI PVSGSGATDF EESLRFQRVL QGQEIFHGFI NTSSDGGAGA RRGRFKGTEF GDSYGFHKVL QGQETVPAYP MMTDQRHQGM
501: SQRNIWCGPF QNFSTRILPP SSVHVSSPLP SSGTNVRLED HHGGSGRCRL FGFPLRDETT AVGSGMVVGP CVEGQNGSSI RGGVSAVQGN HHGRDIYGMR
601: DMLLDIAL
101: CRILDVKLHA ETATDEVYAQ VSLLPESEDI ERKVREEVID VDGGEEDYVV LKRTNTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YTQPRPSQEL
201: LARDLHGLEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD DGKLRLGVRR ASQIEGASAF SSQYNQNMNH NNFAEVAHAI STNSAFNIYY
301: NPKASWSNFI IPAPKFLKTV DYPFCIGMRF KARVESEDAS ERRSPGIITG INDLDPIRWP GSKWRCLLVR WDDIEANGHR QQRISPWEIE PSGSISSSGS
401: FITTGPKRSR IGFSSGKPDI PVSGSGATDF EESLRFQRVL QGQEIFHGFI NTSSDGGAGA RRGRFKGTEF GDSYGFHKVL QGQETVPAYP MMTDQRHQGM
501: SQRNIWCGPF QNFSTRILPP SSVHVSSPLP SSGTNVRLED HHGGSGRCRL FGFPLRDETT AVGSGMVVGP CVEGQNGSSI RGGVSAVQGN HHGRDIYGMR
601: DMLLDIAL
001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL
Arabidopsis Description
ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.