CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67402
CDX74525
CDX74532
CDX82361
CDX92140
CDX95843
CDX99682
CDY01665
CDY01671
CDY46058
CDY46895
CDY52468
CDY67657
CDY71122
CDY71609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30080.1	CDX82361	AT3G17600.1	21798944
AT4G30080.1	CDX92140	AT3G17600.1	21798944
AT4G30080.1	CDX95843	AT3G17600.1	21798944
AT4G30080.1	CDY46058	AT3G17600.1	21798944
AT4G30080.1	CDY46895	AT3G17600.1	21798944
AT4G30080.1	CDY71609	AT3G17600.1	21798944
AT4G30080.1	CDX67402	AT5G38420.1	21798944
AT4G30080.1	CDX74525	AT5G38420.1	21798944
AT4G30080.1	CDX74532	AT5G38420.1	21798944
AT4G30080.1	CDX99682	AT5G38420.1	21798944
AT4G30080.1	CDY01665	AT5G38420.1	21798944
AT4G30080.1	CDY01671	AT5G38420.1	21798944
AT4G30080.1	CDY52468	AT5G38420.1	21798944
AT4G30080.1	CDY67657	AT5G38420.1	21798944
AT4G30080.1	CDY71122	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024109.1-P	Field mustard	nucleus	83.25	99.57
AT4G30080.1	Thale cress	nucleus	70.12	86.87
CDY43553	Canola	nucleus	61.69	83.8
CDX68620	Canola	nucleus	62.29	83.79
CDY46728	Canola	nucleus	81.2	79.86
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	8.67	64.29
HORVU5Hr1G024100.1	Barley	cytosol	10.6	58.28
HORVU3Hr1G081710.1	Barley	cytosol	7.35	58.1
VIT_13s0019g04380.t01	Wine grape	nucleus	47.35	57.88
GSMUA_Achr4P18240_001	Banana	nucleus	42.29	57.83
GSMUA_Achr8P18930_001	Banana	nucleus	38.31	55.5
GSMUA_Achr11P...	Banana	nucleus	36.02	55.27
GSMUA_Achr5P18540_001	Banana	nucleus	33.61	53.76
GSMUA_Achr5P03960_001	Banana	nucleus	36.02	53.49
GSMUA_Achr11P...	Banana	nucleus	38.43	52.81
GSMUA_Achr5P14630_001	Banana	nucleus	35.06	52.81
Os06t0685700-01	Rice	nucleus	44.22	52.43
Zm00001d014013_P002	Maize	nucleus	40.48	52.17
TraesCS7B01G346700.1	Wheat	nucleus	43.13	51.59
EER88840	Sorghum	nucleus	43.98	51.48
TraesCS7D01G436800.1	Wheat	nucleus	42.77	51.08
Os04t0519700-01	Rice	nucleus	24.1	51.02
KRG91907	Soybean	nucleus	36.27	50.76
HORVU7Hr1G101270.1	Barley	nucleus	42.53	50.65
TraesCS1A01G156600.1	Wheat	nucleus	41.93	50.58
TraesCS1D01G155100.1	Wheat	nucleus	41.81	50.44
TraesCS7A01G446900.1	Wheat	nucleus	42.53	50.36
TraesCS1B01G173700.1	Wheat	nucleus	41.81	50.22
HORVU1Hr1G041770.1	Barley	nucleus	41.57	50.15
Os02t0628600-01	Rice	nucleus	41.08	50.07
KRH34867	Soybean	nucleus	36.87	50.0
EER94066	Sorghum	nucleus	41.45	49.93
Zm00001d000358_P001	Maize	nucleus	41.93	49.71
Zm00001d032683_P001	Maize	nucleus	40.72	49.63
Zm00001d014507_P002	Maize	nucleus	43.25	49.52
CDY15734	Canola	nucleus	40.24	49.12
Os10t0479900-01	Rice	nucleus	41.2	49.0
CDY04557	Canola	nucleus	40.24	48.76
EES05458	Sorghum	nucleus	41.2	48.31
Zm00001d017284_P001	Maize	nucleus	40.96	48.09
TraesCS6A01G222300.1	Wheat	nucleus	37.59	46.43
Zm00001d051172_P001	Maize	nucleus	39.64	46.27
TraesCS2B01G397300.1	Wheat	nucleus	39.16	45.9
TraesCS2D01G376600.1	Wheat	nucleus	39.04	45.38
TraesCS6B01G258800.1	Wheat	mitochondrion	40.72	45.25
HORVU6Hr1G058890.2	Barley	mitochondrion	41.08	44.93
HORVU2Hr1G089670.1	Barley	nucleus	38.19	44.65
TraesCS6D01G212700.1	Wheat	plastid	41.08	44.34
KXG36152	Sorghum	nucleus	33.25	41.63
TraesCS2A01G380300.1	Wheat	nucleus	19.52	40.1
KXG26729	Sorghum	nucleus, plastid	34.82	40.03
CDX81024	Canola	cytosol	3.25	39.13
HORVU7Hr1G021880.1	Barley	nucleus	10.0	37.56
Zm00001d025871_P001	Maize	nucleus	25.78	36.39
CDX88392	Canola	nucleus	22.17	34.72
CDX79239	Canola	nucleus	22.17	33.82
CDX68039	Canola	nucleus	22.17	33.76
CDX83839	Canola	mitochondrion	3.98	31.43
HORVU2Hr1G089660.8	Barley	nucleus	9.52	24.31
CDY37679	Canola	nucleus	17.35	24.24
CDY17209	Canola	nucleus	17.23	23.75
CDY27929	Canola	nucleus	17.11	23.36

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078GY59	UniProt:A0A078GY59
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDY30172	ProteinID:CDY30172	ProteinID:CDY30172.1	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00044758001
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39	SMART:SM01019	SUPFAM:SSF101936
TMHMM:TMhelix	UniParc:UPI0004EE3FA6	SEG:seg	:	:	:

Description

BnaA03g49980DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078GY59]

Coordinates

chrLK032250:+:27436..33634

Molecular Weight (calculated)

92671.3 Da

IEP (calculated)

8.524

GRAVY (calculated)

-0.394

Length

830 amino acids

Sequence
(BLAST)

001: MRSITCKTKS DRLKKTFRDQ ISDPLVYLCD EIALVTCKYY WMDINGDAQY FRNVLEARFR ELPQGSDSDS GSEAGNGRPM KLPCNVGYIS NFIIFFLHSV
101: LSIFMPGIKG LTYQIVTIFG AKPNLSPSYT RTLFISLCTT KVNSYPILKQ KLSCRIFRFS RNQEKGFFRT ESSRTCLRST TTVQGIITFV RNDKCNGSDE
201: KRIRERFRST AMACMCWRHG HAENAYDHVD FKNLPIPPMV LCRVLAIKYM ADPESDEVFA KLRLIPLKDD DHDYGDGQEG NGFETNSEKT PSFAKTLTQS
301: DANNGGGFSV PRYCAETIFP RLDYNAEPPV QTILAKDVHG DVWKFRHIYR GTPRRHLLTT GWSNFVNQKK LVAGDSIVFM RAESGDLCVG IRRAKRGGIG
401: NGPEYSPGWN PIGGSCGYSS LLREDESNSL RRSNCSLADR KGKVAAESVI EAATLAINGR GFEVVYYPRA STSEFCVKAL DARAAMRIPW CSGMRFKMAF
501: ETEDSSRISW FMGTVSAVSV SDPIRWPNSP WRLLQVAWDE PDLLQNVKRV NPWLVELVSN VHPIPLTSFS PPRKKMRLPQ HPDYNNLINS IPVPSFPSNP
601: LIRSNPLSSV LDNVPVGLQG ARHNAHQYYG LSSSDLHHYY LNRPPPPPQP SALPLSQPLG LRNIDSRNEK GFCFLTMGTT PCNDDTESKK SHIVLFGKLI
701: LPEEQISEKG STDTANTSGG SKLSSSEEGS PCSNKAHDAA GLETGHCKVF MESDDVGRTL DLSVLGSYEE LSRKLSDMFG IQKAEMLSSV LYRDASGAIK
801: YAGNEPFSEF LKTARRLTIV TEQGSESVVV

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.