Factsheet for HORVU1Hr1G041770.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU1Hr1G035720.2
HORVU1Hr1G041770.1
HORVU2Hr1G010630.1
HORVU2Hr1G010670.1
HORVU2Hr1G010690.1
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU2Hr1G109650.18
HORVU3Hr1G019750.4
HORVU3Hr1G032230.6
HORVU3Hr1G070620.5
HORVU3Hr1G081710.1
HORVU4Hr1G078490.1
HORVU5Hr1G024100.1
HORVU5Hr1G033540.2
HORVU5Hr1G038630.1
HORVU5Hr1G050990.4
HORVU5Hr1G051010.2
HORVU6Hr1G058890.2
HORVU7Hr1G021880.1
HORVU7Hr1G048050.2
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	HORVU2Hr1G109650.18	AT1G19850.1	22096563
AT2G28350.1	HORVU3Hr1G032230.6	AT1G34310.1	22096563
AT2G28350.1	HORVU1Hr1G041770.1	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089660.8	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089670.1	AT2G28350.1	22096563
AT2G28350.1	HORVU3Hr1G081710.1	AT2G28350.1	22096563
AT2G28350.1	HORVU4Hr1G078490.1	AT2G28350.1	22096563
AT2G28350.1	HORVU5Hr1G024100.1	AT2G28350.1	22096563
AT2G28350.1	HORVU6Hr1G058890.2	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G021880.1	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G101270.1	AT2G28350.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G019750.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G070620.5	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G019750.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G070620.5	AT5G25890.1	22096563
AT4G30080.1	HORVU1Hr1G017770.6	AT3G17600.1	21798944
AT4G30080.1	HORVU1Hr1G035720.2	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010670.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010690.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G033540.2	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G038630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G050990.4	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G051010.2	AT5G38420.1	21798944
AT4G30080.1	HORVU7Hr1G048050.2	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G173700.1	Wheat	nucleus	97.67	97.25
TraesCS1D01G155100.1	Wheat	nucleus	97.24	97.24
TraesCS1A01G156600.1	Wheat	nucleus	97.09	97.09
EER94066	Sorghum	nucleus	83.14	83.02
Zm00001d014013_P002	Maize	nucleus	77.18	82.45
Os10t0479900-01	Rice	nucleus	82.7	81.52
Zm00001d032683_P001	Maize	nucleus	79.8	80.62
GSMUA_Achr4P18240_001	Banana	nucleus	61.05	69.19
GSMUA_Achr8P18930_001	Banana	nucleus	55.81	67.02
GSMUA_Achr5P18540_001	Banana	nucleus	49.85	66.09
GSMUA_Achr11P...	Banana	nucleus	57.85	65.89
GSMUA_Achr11P...	Banana	nucleus	51.74	65.8
GSMUA_Achr5P03960_001	Banana	nucleus	53.2	65.47
GSMUA_Achr5P14630_001	Banana	nucleus	52.18	65.15
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.47	64.29
VIT_06s0004g02750.t01	Wine grape	nucleus	64.1	62.03
PGSC0003DMT400055522	Potato	nucleus	61.92	61.56
Solyc09g007810.2.1	Tomato	nucleus	62.06	61.53
VIT_13s0019g04380.t01	Wine grape	nucleus	60.03	60.82
VIT_08s0040g01810.t01	Wine grape	nucleus	54.65	60.35
HORVU7Hr1G101270.1	Barley	nucleus	60.9	60.11
Solyc11g069500.1.1	Tomato	nucleus	60.17	59.23
KRH25023	Soybean	nucleus	60.32	59.2
PGSC0003DMT400020874	Potato	nucleus	59.74	58.8
KRH29907	Soybean	nucleus	59.45	58.68
KRH26435	Soybean	nucleus	59.45	58.43
KRH22880	Soybean	nucleus	56.83	58.36
CDX68620	Canola	nucleus	51.74	57.7
CDY43553	Canola	nucleus	51.16	57.61
KRH32480	Soybean	nucleus	58.43	57.43
Bra011162.1-P	Field mustard	nucleus	53.05	56.41
HORVU3Hr1G081710.1	Barley	cytosol	8.58	56.19
KRG95987	Soybean	nucleus	56.69	55.71
HORVU5Hr1G024100.1	Barley	cytosol	12.06	54.97
AT4G30080.1	Thale cress	nucleus	53.49	54.93
PGSC0003DMT400062489	Potato	nucleus	53.49	54.44
KRH34867	Soybean	nucleus	48.4	54.41
CDY15734	Canola	nucleus	53.63	54.26
KRG91907	Soybean	nucleus	46.51	53.96
CDY04557	Canola	nucleus	53.63	53.87
Solyc06g075150.2.1	Tomato	nucleus	52.47	53.8
AT2G28350.1	Thale cress	nucleus	53.63	53.25
Bra011955.1-P	Field mustard	nucleus	54.36	53.05
Bra024109.1-P	Field mustard	nucleus	49.85	49.42
HORVU6Hr1G058890.2	Barley	mitochondrion	54.36	49.28
HORVU2Hr1G089670.1	Barley	nucleus	50.58	49.01
Solyc10g086130.1.1	Tomato	nucleus	43.46	47.39
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	12.94	45.88
CDY46728	Canola	nucleus	53.05	43.25
HORVU4Hr1G031990.1	Barley	cytosol	4.65	42.67
CDY30172	Canola	nucleus	50.15	41.57
HORVU4Hr1G080510.1	Barley	cytosol	6.54	40.54
HORVU5Hr1G054640.1	Barley	cytosol	6.4	39.64
HORVU7Hr1G021880.1	Barley	nucleus	12.21	38.01
HORVU6Hr1G070410.1	Barley	cytosol	5.38	37.76
HORVU1Hr1G049680.1	Barley	cytosol	4.8	30.84
HORVU7Hr1G108360.1	Barley	nucleus	14.1	28.7
HORVU2Hr1G089660.8	Barley	nucleus	12.21	25.85
HORVU1Hr1G076690.6	Barley	nucleus	26.16	25.82
HORVU3Hr1G072340.2	Barley	nucleus	24.56	24.93
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	26.31	21.17
HORVU2Hr1G125740.1	Barley	nucleus	10.61	18.77

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:HORVU1Hr1G041770	EnsemblPlants:HORVU1Hr1G041770.1
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0Y0Z7	InterPro:PB1_dom	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF36	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI00029551D4	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:M0Y0Z7]

Coordinates

chrchr1H:+:298809599..298814629

Molecular Weight (calculated)

74250.9 Da

IEP (calculated)

7.692

GRAVY (calculated)

-0.201

Length

688 amino acids

Sequence
(BLAST)

001: MKEVGAERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANGGGAAE LAAAVGPRPL PALVLCCVAG VRFLADPDTD EVFAKIRLVP VGPGEAGFRE
101: PEGLGPLGSD PPEAREKLSS FAKTLTQSDA NNGGGFSVPR YCAETIFPKL DYRADPPVQT VLAKDVHGEV WKFRHIYRGT PRRHLLTTGW STFVNQKKLV
201: AGDSIVFLRT EHGELCVGIR RAKRVTCGGM ECISGWNAPG YGGFSAFLKD EENKMMNGGP AGYVKGRGKV KIADVVEAAT LAANSQPFEV VYYPRASTPE
301: FVVKAAAMQA AMRIHWCPGM RFKMAFETED SSRISWFMGT ISSVQVADPL RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSPPRK
401: KLRVPQHPDF PLDGHLFNPI FHGNPLGPSN SPLCCYSDNN SPAGIQGARH AQFGLPLTDH QLNKLHLGLF HGGGFNGLDA LTPSSRIPKG LVLSSAPAHD
501: SVSCLLTIGT PQSTEKSVDR KTPHIMLFGK AILTEQQMTS SGSRETLSSG ATGNSSPISA ALKAGNTSDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM
601: ESEDVGRTID LSVFGSYDEL YGRLADMFGI DKEEITSHLR YRDTAGAVMH TGGLPFSDFM KVARRLTITS GDKGGLAKPL IECMVQRV

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.