Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G080510.1 | Barley | cytosol | 96.0 | 64.86 |
| HORVU1Hr1G049680.1 | Barley | cytosol | 90.67 | 63.55 |
| HORVU5Hr1G054640.1 | Barley | cytosol | 92.0 | 62.16 |
| HORVU6Hr1G070410.1 | Barley | cytosol | 78.67 | 60.2 |
| VIT_03s0167g00010.t01 | Wine grape | nucleus | 48.0 | 35.64 |
| VIT_00s1203g00010.t01 | Wine grape | cytosol | 48.0 | 30.25 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 26.67 | 19.05 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 33.33 | 16.56 |
| KRH10952 | Soybean | nucleus | 50.67 | 13.06 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 18.67 | 12.5 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 24.0 | 8.14 |
| HORVU3Hr1G072340.2 | Barley | nucleus | 49.33 | 5.46 |
| HORVU1Hr1G076690.6 | Barley | nucleus | 45.33 | 4.88 |
| HORVU1Hr1G087460.6 | Barley | mitochondrion, nucleus | 54.67 | 4.8 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 42.67 | 4.65 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 42.67 | 4.59 |
| HORVU7Hr1G108360.1 | Barley | nucleus | 18.67 | 4.14 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 38.67 | 4.08 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 41.33 | 4.08 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 5.33 | 1.23 |
| KRH10951 | Soybean | cytosol, nucleus | 0.0 | 0.0 |
| HORVU6Hr1G026750.1 | Barley | cytosol, nucleus, plastid | 0.0 | 0.0 |
| HORVU2Hr1G125740.1 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G031990.1 | EnsemblPlantsGene:HORVU4Hr1G031990 | Gene3D:2.40.330.10 | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR015300 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF10 | SUPFAM:SSF101936 | UniParc:UPI000B4708A9 | UniProt:A0A287NQH8 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr4H:+:215520023..215520680
Molecular Weight (calculated)
8341.8 Da
IEP (calculated)
6.226
GRAVY (calculated)
-0.563
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MHADKDTDEV YAQMTLQPVN SETDVFPIQS LGSYAKSKHP AEYFCKNLTA SDMSTHGGFS VPRRAAGKLF PQLDY
001: MKTSCLVNGG GTITTTTSQS TLLEEMKLLK DQSGTRKPVI NSELWHACAG PLVCLPQVGS LVYYFSQGHS EQVAVSTRRS ATTQVPNYPN LPSQLMCQVH
101: NVTLHADKDS DEIYAQMSLQ PVHSERDVFP VPDFGMLRGS KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSA QPPTQELVVR DLHENTWTFR
201: HIYRGQPKRH LLTTGWSLFV GSKRLRAGDS VLFIRDEKSQ LMVGVRRANR QQTALPSSVL SADSMHIGVL AAAAHATANR TPFLIFYNPR ACPAEFVIPL
301: AKYRKAICGS QLSVGMRFGM MFETEDSGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD EPGCNDKPTR VSPWDIETPE SLFIFPSLTS GLKRQLHPSY
401: FAGETEWGSL IKRPLIRVPD SANGIMPYAS FPSMASEQLM KMMMRPHNNQ NVPSFMSEMQ QNIVMGNGGL LGDMKMQQPL MMNQKSEMVQ PQNKLTVNPS
501: ASNTSGQEQN LSQSMSAPAK PENSTLSGCS SGRVQHGLEQ SMEQASQVTT STVCNEEKVN QLLQKPGASS PVQADQCLDI THQIYQPQSD PINGFSFLET
601: DELTSQVSSF QSLAGSYKQP FILSSQDSSA VVLPDSTNSP LFHDVWDTQL NGLKFDQFSP LMQQDLYASQ NICMSNSTTS NILDPPLSNT VLDDFCAIKD
701: TDFQNHPSGC LVGNNNTSFA QDVQSQITSA SFADSQAFSR QDFPDNSGGT GTSSSNVDFD DCSLRQNSKG SSWQKIATPR VRTYTKVQKT GSVGRSIDVT
801: SFKDYEELKS AIECMFGLEG LLTHPQSSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGINDLKTSV S
101: NVTLHADKDS DEIYAQMSLQ PVHSERDVFP VPDFGMLRGS KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSA QPPTQELVVR DLHENTWTFR
201: HIYRGQPKRH LLTTGWSLFV GSKRLRAGDS VLFIRDEKSQ LMVGVRRANR QQTALPSSVL SADSMHIGVL AAAAHATANR TPFLIFYNPR ACPAEFVIPL
301: AKYRKAICGS QLSVGMRFGM MFETEDSGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD EPGCNDKPTR VSPWDIETPE SLFIFPSLTS GLKRQLHPSY
401: FAGETEWGSL IKRPLIRVPD SANGIMPYAS FPSMASEQLM KMMMRPHNNQ NVPSFMSEMQ QNIVMGNGGL LGDMKMQQPL MMNQKSEMVQ PQNKLTVNPS
501: ASNTSGQEQN LSQSMSAPAK PENSTLSGCS SGRVQHGLEQ SMEQASQVTT STVCNEEKVN QLLQKPGASS PVQADQCLDI THQIYQPQSD PINGFSFLET
601: DELTSQVSSF QSLAGSYKQP FILSSQDSSA VVLPDSTNSP LFHDVWDTQL NGLKFDQFSP LMQQDLYASQ NICMSNSTTS NILDPPLSNT VLDDFCAIKD
701: TDFQNHPSGC LVGNNNTSFA QDVQSQITSA SFADSQAFSR QDFPDNSGGT GTSSSNVDFD DCSLRQNSKG SSWQKIATPR VRTYTKVQKT GSVGRSIDVT
801: SFKDYEELKS AIECMFGLEG LLTHPQSSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGINDLKTSV S
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.