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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU1Hr1G035720.2
HORVU1Hr1G041770.1
HORVU2Hr1G010630.1
HORVU2Hr1G010670.1
HORVU2Hr1G010690.1
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU2Hr1G109650.18
HORVU3Hr1G019750.4
HORVU3Hr1G032230.6
HORVU3Hr1G070620.5
HORVU3Hr1G081710.1
HORVU4Hr1G078490.1
HORVU5Hr1G024100.1
HORVU5Hr1G033540.2
HORVU5Hr1G038630.1
HORVU5Hr1G050990.4
HORVU5Hr1G051010.2
HORVU6Hr1G058890.2
HORVU7Hr1G021880.1
HORVU7Hr1G048050.2
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G28350.1 HORVU2Hr1G109650.18 AT1G19850.1 22096563
AT2G28350.1 HORVU3Hr1G032230.6 AT1G34310.1 22096563
AT2G28350.1 HORVU1Hr1G041770.1 AT2G28350.1 22096563
AT2G28350.1 HORVU2Hr1G089660.8 AT2G28350.1 22096563
AT2G28350.1 HORVU2Hr1G089670.1 AT2G28350.1 22096563
AT2G28350.1 HORVU3Hr1G081710.1 AT2G28350.1 22096563
AT2G28350.1 HORVU4Hr1G078490.1 AT2G28350.1 22096563
AT2G28350.1 HORVU5Hr1G024100.1 AT2G28350.1 22096563
AT2G28350.1 HORVU6Hr1G058890.2 AT2G28350.1 22096563
AT2G28350.1 HORVU7Hr1G021880.1 AT2G28350.1 22096563
AT2G28350.1 HORVU7Hr1G101270.1 AT2G28350.1 22096563
AT2G28350.1 HORVU1Hr1G028170.4 AT3G16500.1 21734647
AT2G28350.1 HORVU3Hr1G019750.4 AT3G16500.1 21734647
AT2G28350.1 HORVU3Hr1G070620.5 AT3G16500.1 21734647
AT2G28350.1 HORVU3Hr1G032230.6 AT3G61830.1 22096563
AT2G28350.1 HORVU1Hr1G028170.4 AT5G25890.1 22096563
AT2G28350.1 HORVU3Hr1G019750.4 AT5G25890.1 22096563
AT2G28350.1 HORVU3Hr1G070620.5 AT5G25890.1 22096563
AT4G30080.1 HORVU1Hr1G017770.6 AT3G17600.1 21798944
AT4G30080.1 HORVU1Hr1G035720.2 AT5G38420.1 21798944
AT4G30080.1 HORVU2Hr1G010630.1 AT5G38420.1 21798944
AT4G30080.1 HORVU2Hr1G010670.1 AT5G38420.1 21798944
AT4G30080.1 HORVU2Hr1G010690.1 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G033540.2 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G038630.1 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G050990.4 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G051010.2 AT5G38420.1 21798944
AT4G30080.1 HORVU7Hr1G048050.2 AT5G38420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0519700-01 Rice nucleus 24.92 20.66
GSMUA_Achr11P... Banana nucleus 26.77 16.08
GSMUA_Achr5P18540_001 Banana nucleus 24.62 15.41
KRH34867 Soybean nucleus 28.31 15.03
KRG91907 Soybean nucleus 27.38 15.01
GSMUA_Achr8P18930_001 Banana nucleus 25.85 14.66
TraesCS2A01G380300.1 Wheat nucleus 18.15 14.6
GSMUA_Achr11P... Banana nucleus 26.46 14.24
GSMUA_Achr4P18240_001 Banana nucleus 26.46 14.17
GSMUA_Achr5P03960_001 Banana nucleus 24.31 14.13
TraesCS2B01G397300.1 Wheat nucleus 30.77 14.12
TraesCS2D01G376600.1 Wheat nucleus 30.77 14.01
HORVU2Hr1G089670.1 Barley nucleus 30.46 13.94
GSMUA_Achr5P14630_001 Banana nucleus 23.38 13.79
VIT_13s0019g04380.t01 Wine grape nucleus 28.0 13.4
CDY43553 Canola nucleus 24.92 13.26
CDX68620 Canola nucleus 24.92 13.13
KRG95987 Soybean nucleus 28.0 13.0
PGSC0003DMT400062489 Potato nucleus 26.77 12.87
Solyc11g069500.1.1 Tomato nucleus 27.38 12.73
KRH22880 Soybean nucleus 26.15 12.69
HORVU7Hr1G101270.1 Barley nucleus 27.08 12.63
AT2G28350.1 Thale cress nucleus 26.77 12.55
VIT_08s0040g01810.t01 Wine grape nucleus 24.0 12.52
Bra011162.1-P Field mustard nucleus 24.92 12.52
VIT_06s0004g02750.t01 Wine grape nucleus 27.38 12.52
CDY15734 Canola nucleus 26.15 12.5
PGSC0003DMT400020874 Potato nucleus 26.77 12.45
KRH32480 Soybean nucleus 26.77 12.43
CDY04557 Canola nucleus 26.15 12.41
AT4G30080.1 Thale cress nucleus 25.54 12.39
HORVU6Hr1G058890.2 Barley mitochondrion 28.92 12.38
Solyc06g075150.2.1 Tomato nucleus 25.54 12.37
HORVU1Hr1G041770.1 Barley nucleus 25.85 12.21
Bra011955.1-P Field mustard nucleus 26.46 12.2
KRH26435 Soybean nucleus 26.15 12.14
PGSC0003DMT400055522 Potato nucleus 25.85 12.14
KRH25023 Soybean nucleus 26.15 12.13
Solyc09g007810.2.1 Tomato nucleus 25.85 12.1
Zm00001d025871_P001 Maize nucleus 21.85 12.07
KXG36152 Sorghum nucleus 23.38 11.46
Bra024109.1-P Field mustard nucleus 24.31 11.38
KRH29907 Soybean nucleus 24.31 11.33
Solyc10g086130.1.1 Tomato nucleus 21.54 11.09
HORVU2Hr1G125740.1 Barley nucleus 13.23 11.05
KXG26729 Sorghum nucleus, plastid 24.31 10.94
HORVU7Hr1G108360.1 Barley nucleus 11.08 10.65
HORVU4Hr1G078490.1 Barley cytosol, nucleus, plastid 3.38 9.82
CDY46728 Canola nucleus 24.92 9.6
CDY30172 Canola nucleus 24.31 9.52
HORVU3Hr1G081710.1 Barley cytosol 2.77 8.57
HORVU5Hr1G024100.1 Barley cytosol 3.38 7.28
HORVU6Hr1G070410.1 Barley cytosol 2.15 7.14
HORVU4Hr1G080510.1 Barley cytosol 2.15 6.31
HORVU5Hr1G054640.1 Barley cytosol 2.15 6.31
HORVU3Hr1G072340.2 Barley nucleus 12.31 5.9
HORVU7Hr1G021880.1 Barley nucleus 4.0 5.88
HORVU1Hr1G076690.6 Barley nucleus 12.62 5.88
HORVU4Hr1G031990.1 Barley cytosol 1.23 5.33
HORVU1Hr1G087460.6 Barley mitochondrion, nucleus 13.23 5.03
HORVU1Hr1G049680.1 Barley cytosol 0.92 2.8
HORVU6Hr1G026750.1 Barley cytosol, nucleus, plastid 1.54 2.58
Protein Annotations
Gene3D:2.30.30.1040MapMan:35.1InterPro:Auxin_respncoils:CoilGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009987EnsemblPlantsGene:HORVU2Hr1G089660EnsemblPlants:HORVU2Hr1G089660.8PFAM:PF06507PANTHER:PTHR31384
PANTHER:PTHR31384:SF15SEG:seg::::
Description
No Description!
Coordinates
chrchr2H:-:640237269..640238348
Molecular Weight (calculated)
19247.8 Da
IEP (calculated)
10.019
GRAVY (calculated)
-0.254
Length
325 amino acids
Sequence
(BLAST)
001: FYFCEFDLFQ KAFQLQASAT EDMGRQVLAF VERYNXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS CRARRTARGS PGPSTRSSGX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXFEVVYYP RASTPEFCVR AGAVRAAMQV QWRPGMRFKM AFETEDSSRI SWFMGTVAGI HAADPSRWPQ SPWRLLQVRT APHGTLWRFS
301: CLEPHGQELS NGTGPWRHWH HHLIH
Best Arabidopsis Sequence Match ( AT2G28350.2 )
(BLAST)
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRK
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.