Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G122600.2 | Wheat | nucleus | 81.38 | 89.33 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 80.97 | 88.11 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 54.66 | 59.21 |
| EES17832 | Sorghum | nucleus | 55.06 | 56.2 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 55.06 | 55.06 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 49.39 | 49.8 |
| AT5G25890.1 | Thale cress | nucleus | 30.36 | 42.86 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 29.96 | 42.53 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 29.96 | 42.53 |
| CDX87072 | Canola | cytosol | 29.96 | 42.29 |
| Bra009867.1-P | Field mustard | cytosol | 29.96 | 42.05 |
| Bra036557.1-P | Field mustard | nucleus | 29.15 | 41.14 |
| PGSC0003DMT400006709 | Potato | nucleus | 46.96 | 40.99 |
| Solyc03g121060.2.1 | Tomato | nucleus | 46.15 | 39.72 |
| CDY22876 | Canola | nucleus | 40.08 | 39.13 |
| Bra018938.1-P | Field mustard | nucleus | 39.68 | 38.74 |
| CDY33844 | Canola | nucleus | 39.68 | 38.74 |
| AT3G16500.1 | Thale cress | nucleus | 41.3 | 37.92 |
| CDX87863 | Canola | nucleus | 38.87 | 37.8 |
| Bra014303.1-P | Field mustard | nucleus | 40.89 | 37.41 |
| CDX82399 | Canola | nucleus | 40.89 | 37.13 |
| Bra001634.1-P | Field mustard | nucleus | 40.89 | 37.13 |
| CDY43104 | Canola | nucleus | 40.08 | 37.08 |
| AT1G51950.1 | Thale cress | nucleus | 40.08 | 37.08 |
| CDY46538 | Canola | nucleus | 40.49 | 37.04 |
| CDY19790 | Canola | cytosol | 29.15 | 36.92 |
| CDY34957 | Canola | nucleus | 40.08 | 36.8 |
| CDY64626 | Canola | cytosol | 40.08 | 36.8 |
| Bra021184.1-P | Field mustard | nucleus | 40.08 | 36.8 |
| CDY53439 | Canola | nucleus | 40.08 | 36.26 |
| KRH09948 | Soybean | nucleus | 46.96 | 36.25 |
| CDX75884 | Canola | cytosol | 39.27 | 35.79 |
| CDX92077 | Canola | nucleus | 40.49 | 35.09 |
| Bra022164.1-P | Field mustard | nucleus | 40.49 | 35.09 |
| KRH47203 | Soybean | nucleus | 44.13 | 34.38 |
| KRH44271 | Soybean | nucleus | 43.32 | 34.19 |
| KRH23388 | Soybean | nucleus | 45.75 | 32.66 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 21.46 | 31.55 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 21.86 | 31.03 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 43.32 | 31.01 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 43.32 | 30.31 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 47.37 | 26.65 |
| HORVU6Hr1G091260.3 | Barley | nucleus | 27.13 | 23.84 |
| HORVU7Hr1G077110.10 | Barley | nucleus | 26.32 | 20.19 |
| HORVU4Hr1G016160.1 | Barley | plastid | 26.32 | 18.11 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 12.96 | 15.46 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | UniProt:A0A287F0C3 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G028170 |
| EnsemblPlants:HORVU1Hr1G028170.4 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF33 | SUPFAM:SSF54277 | UniParc:UPI000B46D77D | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287F0C3]
Coordinates
chrchr1H:+:148724451..148725944
Molecular Weight (calculated)
26136.9 Da
IEP (calculated)
7.436
GRAVY (calculated)
-0.358
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWKGSRDEE ERGLELSLGL PGYFSGSPGQ EGLEEKGGRR GAAGTGAGAK GRSNGTKPSR PSAAAPVVGW PPVRSFRRNL ASSSSKPPPA ELRHGAGGKA
101: DGCIYKGQFV KINMDGIPIG RKVDLKAHDS YGKLAAAVDH LFEGLLAAQR DESSCAGEKP AAITGLLDGS GEYTLVYEDD EGDQMLVGDV PWDMFIATAK
201: RLRVLRSSDL NASSVSTAGN ADAFSTYFKL IDPCLLLFLL VGSYERR
101: DGCIYKGQFV KINMDGIPIG RKVDLKAHDS YGKLAAAVDH LFEGLLAAQR DESSCAGEKP AAITGLLDGS GEYTLVYEDD EGDQMLVGDV PWDMFIATAK
201: RLRVLRSSDL NASSVSTAGN ADAFSTYFKL IDPCLLLFLL VGSYERR
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTCK LLFLYV
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTCK LLFLYV
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.