Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82399 | Canola | nucleus | 94.46 | 94.12 |
| CDY43104 | Canola | nucleus | 83.76 | 85.02 |
| CDY34957 | Canola | nucleus | 82.29 | 82.9 |
| CDY64626 | Canola | cytosol | 81.92 | 82.53 |
| AT3G16500.1 | Thale cress | nucleus | 80.44 | 81.04 |
| CDX92077 | Canola | nucleus | 81.92 | 77.89 |
| CDX87863 | Canola | nucleus | 59.41 | 63.39 |
| CDY33844 | Canola | nucleus | 57.56 | 61.66 |
| CDY22876 | Canola | nucleus | 57.56 | 61.66 |
| CDY46538 | Canola | nucleus | 61.25 | 61.48 |
| CDY53439 | Canola | nucleus | 61.25 | 60.81 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 29.89 | 46.55 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 29.89 | 46.55 |
| CDX87072 | Canola | cytosol | 29.15 | 45.14 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 37.27 | 44.89 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 37.27 | 44.49 |
| KRH09948 | Soybean | nucleus | 50.92 | 43.12 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 35.79 | 42.54 |
| PGSC0003DMT400006709 | Potato | nucleus | 43.17 | 41.34 |
| Os01t0190300-01 | Rice | nucleus | 36.16 | 41.18 |
| Solyc03g121060.2.1 | Tomato | nucleus | 43.54 | 41.12 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 34.69 | 40.87 |
| EES17832 | Sorghum | nucleus | 36.16 | 40.5 |
| CDY19790 | Canola | cytosol | 28.78 | 40.0 |
| KRH23388 | Soybean | nucleus | 50.92 | 39.88 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 33.58 | 39.57 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 33.21 | 39.47 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 33.21 | 39.3 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 35.79 | 39.27 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 32.84 | 37.87 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 34.32 | 37.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.44 | 37.34 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 33.58 | 37.14 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 34.32 | 36.9 |
| CDY51701 | Canola | nucleus | 27.31 | 36.82 |
| KRH47203 | Soybean | nucleus | 42.8 | 36.59 |
| KRH44271 | Soybean | nucleus | 42.07 | 36.42 |
| Os02t0228900-01 | Rice | nucleus | 39.48 | 35.67 |
| OQU84670 | Sorghum | nucleus | 36.16 | 33.56 |
| CDY46895 | Canola | cytosol | 8.86 | 33.33 |
| Os01t0741900-01 | Rice | nucleus | 40.96 | 33.13 |
| CDY53196 | Canola | nucleus | 27.68 | 33.04 |
| CDY59182 | Canola | nucleus | 27.31 | 32.89 |
| Zm00001d016277_P002 | Maize | nucleus | 36.16 | 32.78 |
| CDY19477 | Canola | nucleus | 28.04 | 32.34 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 39.85 | 32.24 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 35.06 | 31.99 |
| CDX84693 | Canola | nucleus | 28.41 | 31.82 |
| CDY17158 | Canola | nucleus | 27.68 | 31.78 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 40.22 | 31.78 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 51.29 | 31.66 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 34.32 | 31.53 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 39.48 | 31.38 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 42.44 | 31.34 |
| CDX79522 | Canola | nucleus | 28.41 | 31.3 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 33.95 | 31.29 |
| CDY35203 | Canola | nucleus | 28.04 | 31.28 |
| Os05t0523300-01 | Rice | nucleus | 37.64 | 31.19 |
| CDY38374 | Canola | nucleus | 27.31 | 31.09 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 40.22 | 30.88 |
| CDY18243 | Canola | nucleus | 25.83 | 30.3 |
| CDX89814 | Canola | nucleus | 26.2 | 30.21 |
| KXG33336 | Sorghum | nucleus | 40.22 | 29.86 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 39.11 | 29.69 |
| CDY71609 | Canola | nucleus, plastid | 16.61 | 28.66 |
| Zm00001d038784_P001 | Maize | nucleus | 37.27 | 28.61 |
| KXG22376 | Sorghum | nucleus | 36.16 | 28.41 |
| OQU86163 | Sorghum | golgi, plastid | 37.27 | 28.21 |
| CDX82361 | Canola | cytosol, plastid | 16.24 | 28.03 |
| CDX95843 | Canola | plastid | 15.87 | 27.74 |
| CDX92140 | Canola | nucleus, plastid | 15.87 | 27.22 |
| CDX67874 | Canola | plastid | 16.97 | 26.59 |
| CDY58757 | Canola | plastid | 16.61 | 26.16 |
| CDY25089 | Canola | plastid | 16.61 | 26.01 |
| CDY27511 | Canola | cytosol, plastid | 16.61 | 25.86 |
| CDY48005 | Canola | cytosol, plastid | 16.61 | 25.86 |
| CDY11402 | Canola | plastid | 16.24 | 24.86 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 24.72 | 24.72 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 23.62 | 23.62 |
| CDY46058 | Canola | plastid | 13.28 | 21.56 |
| CDX75231 | Canola | nucleus | 18.08 | 21.21 |
| CDY13478 | Canola | nucleus | 18.45 | 20.58 |
| CDX72351 | Canola | nucleus | 18.45 | 20.24 |
| CDX68829 | Canola | nucleus | 16.97 | 20.18 |
| CDX92888 | Canola | nucleus | 28.04 | 18.77 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | GO:A0A078CII6 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX75884 |
| ProteinID:CDX75884 | ProteinID:CDX75884.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00123883001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0004EBD3D5 | SEG:seg | : |
Description
BnaC03g39670D
Coordinates
chrLK031805:-:1557339..1559032
Molecular Weight (calculated)
30499.2 Da
IEP (calculated)
9.730
GRAVY (calculated)
-0.866
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGCPRNKET CPKLLDLIPQ GRKWYHEEKN NTDHKHKLEL RLAPPGGDEE DRSAIYKTNI ETRNNNIEKE AEDKSIFNLS GNHSSPPNKT TYAPHISHKR
101: TAPGPVVGWP PVRSFRKKLA STSSSKLGNE SFLGGQVNKS GDGEKQVQPK REGMYVKINM DSVPIGRKVD LNAYNSYEHL SFAVDKLFRG LLAAQRDTSG
201: AEGEEKPIIR LLDGKGEFTL TYEDNEGDKM LVGDVPWHMF ISSVKRLRVV KSSEISSTLR FGCSKQQKMR T
101: TAPGPVVGWP PVRSFRKKLA STSSSKLGNE SFLGGQVNKS GDGEKQVQPK REGMYVKINM DSVPIGRKVD LNAYNSYEHL SFAVDKLFRG LLAAQRDTSG
201: AEGEEKPIIR LLDGKGEFTL TYEDNEGDKM LVGDVPWHMF ISSVKRLRVV KSSEISSTLR FGCSKQQKMR T
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.