Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G127400.1 | Wheat | nucleus | 84.13 | 92.17 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 83.33 | 91.3 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 77.78 | 80.0 |
| Os01t0190300-01 | Rice | nucleus | 55.95 | 59.24 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 51.59 | 57.78 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 51.19 | 56.33 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 14.29 | 43.9 |
| CDX87072 | Canola | cytosol | 30.16 | 43.43 |
| AT5G25890.1 | Thale cress | nucleus | 29.37 | 42.29 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 28.97 | 41.95 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 28.97 | 41.95 |
| Bra009867.1-P | Field mustard | cytosol | 28.97 | 41.48 |
| Bra036557.1-P | Field mustard | nucleus | 28.57 | 41.14 |
| OQU86163 | Sorghum | golgi, plastid | 55.16 | 38.83 |
| CDX87863 | Canola | nucleus | 38.1 | 37.8 |
| CDY19790 | Canola | cytosol | 28.57 | 36.92 |
| Bra018938.1-P | Field mustard | nucleus | 36.9 | 36.76 |
| CDY22876 | Canola | nucleus | 36.9 | 36.76 |
| AT1G51950.1 | Thale cress | nucleus | 38.89 | 36.7 |
| CDY33844 | Canola | nucleus | 36.51 | 36.36 |
| AT3G16500.1 | Thale cress | nucleus | 38.49 | 36.06 |
| CDY43104 | Canola | nucleus | 38.1 | 35.96 |
| PGSC0003DMT400006709 | Potato | nucleus | 40.08 | 35.69 |
| CDY64626 | Canola | cytosol | 38.1 | 35.69 |
| CDY34957 | Canola | nucleus | 38.1 | 35.69 |
| Bra021184.1-P | Field mustard | nucleus | 38.1 | 35.69 |
| CDY46538 | Canola | nucleus | 38.1 | 35.56 |
| Bra014303.1-P | Field mustard | nucleus | 38.1 | 35.56 |
| CDY53439 | Canola | nucleus | 38.1 | 35.16 |
| Bra001634.1-P | Field mustard | nucleus | 37.3 | 34.56 |
| CDX82399 | Canola | nucleus | 37.3 | 34.56 |
| Solyc03g121060.2.1 | Tomato | nucleus | 39.29 | 34.49 |
| CDX75884 | Canola | cytosol | 36.9 | 34.32 |
| KRH09948 | Soybean | nucleus | 42.86 | 33.75 |
| CDX92077 | Canola | nucleus | 37.7 | 33.33 |
| Bra022164.1-P | Field mustard | nucleus | 37.7 | 33.33 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 22.22 | 32.0 |
| KRH23388 | Soybean | nucleus | 42.06 | 30.64 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 41.27 | 30.14 |
| KRH47203 | Soybean | nucleus | 37.7 | 29.97 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 34.92 | 29.93 |
| KRH44271 | Soybean | nucleus | 36.9 | 29.71 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 37.7 | 27.86 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 41.27 | 23.69 |
| TraesCS7A01G322000.1 | Wheat | nucleus | 24.6 | 22.96 |
| TraesCS6A01G392600.3 | Wheat | cytosol, nucleus, plastid | 25.0 | 22.11 |
| TraesCS4A01G204900.1 | Wheat | nucleus | 25.4 | 17.73 |
| TraesCS1A01G082700.2 | Wheat | plastid | 15.08 | 14.45 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF45 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS3A01G108400 | EnsemblPlants:TraesCS3A01G108400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:73929277..73931591
Molecular Weight (calculated)
26368.4 Da
IEP (calculated)
10.396
GRAVY (calculated)
-0.289
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWSGFREAA AGESGLELSL GLPAYFTKPA APPAGLDGQE SSGAGAGDFA RHPDGGSNGS KAKPAAAAAP VVGWPPVRSF RRNLAASKPS SSKEDGRASK
101: DKGADEPAGR KGLFVKVNMD GVPIGRKVEL KEDGSYADLS ATVDKLFRSL LAAQRDAAAA PDAIAGGEYT LVYEDDEGDR MLVGDVPWQM FIVTAKRLRG
201: LKSSDLPASS LTAAGSRKRP AAAAIIRAVS VTRVNPVLLL RTYARMRMKS RL
101: DKGADEPAGR KGLFVKVNMD GVPIGRKVEL KEDGSYADLS ATVDKLFRSL LAAQRDAAAA PDAIAGGEYT LVYEDDEGDR MLVGDVPWQM FIVTAKRLRG
201: LKSSDLPASS LTAAGSRKRP AAAAIIRAVS VTRVNPVLLL RTYARMRMKS RL
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.