Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G155100.1 | Wheat | nucleus | 98.84 | 99.27 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 98.12 | 98.55 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 97.25 | 97.67 |
| EER94066 | Sorghum | nucleus | 83.36 | 83.6 |
| Zm00001d014013_P002 | Maize | nucleus | 77.28 | 82.92 |
| Os10t0479900-01 | Rice | nucleus | 82.63 | 81.81 |
| Zm00001d032683_P001 | Maize | nucleus | 79.88 | 81.06 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 61.22 | 69.69 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 56.15 | 67.71 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 50.36 | 67.05 |
| GSMUA_Achr11P... | Banana | nucleus | 58.32 | 66.72 |
| GSMUA_Achr11P... | Banana | nucleus | 51.95 | 66.36 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 53.26 | 65.83 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 52.1 | 65.34 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 64.54 | 62.73 |
| PGSC0003DMT400055522 | Potato | nucleus | 61.79 | 61.71 |
| Solyc09g007810.2.1 | Tomato | nucleus | 61.94 | 61.67 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 60.2 | 61.27 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 61.36 | 61.1 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 54.85 | 60.83 |
| KRH25023 | Soybean | nucleus | 60.64 | 59.77 |
| Solyc11g069500.1.1 | Tomato | nucleus | 60.35 | 59.66 |
| KRH29907 | Soybean | nucleus | 59.77 | 59.25 |
| PGSC0003DMT400020874 | Potato | nucleus | 59.91 | 59.23 |
| KRH26435 | Soybean | nucleus | 59.77 | 59.0 |
| KRH22880 | Soybean | nucleus | 57.02 | 58.81 |
| KRH32480 | Soybean | nucleus | 59.19 | 58.43 |
| CDX68620 | Canola | nucleus | 51.81 | 58.02 |
| CDY43553 | Canola | nucleus | 51.23 | 57.94 |
| Bra011162.1-P | Field mustard | nucleus | 53.11 | 56.72 |
| KRG95987 | Soybean | nucleus | 57.02 | 56.29 |
| AT4G30080.1 | Thale cress | nucleus | 53.55 | 55.22 |
| CDY15734 | Canola | nucleus | 54.12 | 55.0 |
| PGSC0003DMT400062489 | Potato | nucleus | 53.69 | 54.88 |
| CDY04557 | Canola | nucleus | 54.12 | 54.6 |
| Solyc06g075150.2.1 | Tomato | nucleus | 52.82 | 54.4 |
| KRH34867 | Soybean | nucleus | 48.05 | 54.25 |
| AT2G28350.1 | Thale cress | nucleus | 54.12 | 53.97 |
| KRG91907 | Soybean | nucleus | 46.16 | 53.79 |
| Bra011955.1-P | Field mustard | nucleus | 54.85 | 53.76 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 51.37 | 50.14 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 54.12 | 50.07 |
| Bra024109.1-P | Field mustard | nucleus | 49.93 | 49.71 |
| Solyc10g086130.1.1 | Tomato | nucleus | 43.56 | 47.7 |
| CDY46728 | Canola | nucleus | 53.11 | 43.48 |
| CDY30172 | Canola | nucleus | 50.22 | 41.81 |
| TraesCS1B01G347900.2 | Wheat | nucleus | 26.92 | 26.65 |
| TraesCS3B01G273400.2 | Wheat | nucleus | 26.34 | 25.78 |
| TraesCS3B01G327000.1 | Wheat | nucleus | 24.46 | 25.61 |
| TraesCS1B01G424700.1 | Wheat | nucleus | 26.48 | 24.66 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF36 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:TraesCS1B01G173700 | EnsemblPlants:TraesCS1B01G173700.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:+:310926572..310931299
Molecular Weight (calculated)
74733.5 Da
IEP (calculated)
7.700
GRAVY (calculated)
-0.201
Length
691 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEVGEERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANGGGASA AAELAAAVGP RPLPALVLCC VAGVRFLADP ETDEVFAKIR LVPVGPGEAG
101: FREPEGLGPL GGDPAEARDK LASFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYRADPP VQTVLAKDVH GEVWKFRHIY RGTPRRHLLT TGWSTFVNQK
201: KLVAGDSIVF LRTEHGELCV GIRRAKRVTC GGMECISGWN APGYGGFSAF LKDEENKMMN GGPAGYVKGR GKVKIDHVVE AATLAANSQP FEVVYYPRAS
301: TPEFVVKAAA MQAAMRIHWC PGMRFKMAFE TEDSSRISWF MGTISSVQVA DPLRWPNSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSSI PPIHLGPFSP
401: PRKKLRVPQH PDFPLDGHLF NPIFHGNPLG PSNSPLCCYS DNNSPAGIQG ARHAQFGLPL TDHQLNKLHL GLFHGGGFNR LDALTPSSRI PKGFVLSSAP
501: AHDSVSCLLT IGTPQSTEKS VDRKTPHIML FGKAILTEQQ MTSSGSRETL SSGATGNSSP ISTGLKAGNT SDGSGSSICI GFSSQGHEAS DLGLEAGHCK
601: VFMESEDVGR TIDLSVFGSY DELYGRLADM FGIEKEEIIS HLRYRDTAGA VMHTGGLPFS DFMKVARRLT IISGEKGGLA KPLIECMVQR V
101: FREPEGLGPL GGDPAEARDK LASFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYRADPP VQTVLAKDVH GEVWKFRHIY RGTPRRHLLT TGWSTFVNQK
201: KLVAGDSIVF LRTEHGELCV GIRRAKRVTC GGMECISGWN APGYGGFSAF LKDEENKMMN GGPAGYVKGR GKVKIDHVVE AATLAANSQP FEVVYYPRAS
301: TPEFVVKAAA MQAAMRIHWC PGMRFKMAFE TEDSSRISWF MGTISSVQVA DPLRWPNSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSSI PPIHLGPFSP
401: PRKKLRVPQH PDFPLDGHLF NPIFHGNPLG PSNSPLCCYS DNNSPAGIQG ARHAQFGLPL TDHQLNKLHL GLFHGGGFNR LDALTPSSRI PKGFVLSSAP
501: AHDSVSCLLT IGTPQSTEKS VDRKTPHIML FGKAILTEQQ MTSSGSRETL SSGATGNSSP ISTGLKAGNT SDGSGSSICI GFSSQGHEAS DLGLEAGHCK
601: VFMESEDVGR TIDLSVFGSY DELYGRLADM FGIEKEEIIS HLRYRDTAGA VMHTGGLPFS DFMKVARRLT IISGEKGGLA KPLIECMVQR V
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.