Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G380300.1 | Wheat | nucleus | 54.9 | 97.03 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 95.94 | 96.75 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 88.66 | 89.15 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 12.18 | 82.86 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 16.39 | 77.48 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 12.04 | 76.79 |
| Os04t0519700-01 | Rice | nucleus | 39.22 | 71.43 |
| TraesCS6D01G212700.1 | Wheat | plastid | 64.29 | 59.69 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 50.56 | 59.47 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 47.62 | 59.34 |
| GSMUA_Achr11P... | Banana | nucleus | 44.26 | 58.41 |
| KXG36152 | Sorghum | nucleus | 53.78 | 57.92 |
| GSMUA_Achr11P... | Banana | nucleus | 48.88 | 57.78 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 44.82 | 57.25 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 43.84 | 56.81 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 41.18 | 56.65 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 48.88 | 56.02 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 53.78 | 55.25 |
| KXG26729 | Sorghum | nucleus, plastid | 55.46 | 54.85 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 51.82 | 54.49 |
| Solyc09g007810.2.1 | Tomato | nucleus | 52.52 | 54.03 |
| CDY43553 | Canola | nucleus | 46.22 | 54.01 |
| PGSC0003DMT400055522 | Potato | nucleus | 52.1 | 53.76 |
| CDX68620 | Canola | nucleus | 46.22 | 53.48 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 53.22 | 53.45 |
| Bra011162.1-P | Field mustard | nucleus | 47.34 | 52.24 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 50.14 | 52.03 |
| KRH32480 | Soybean | nucleus | 50.84 | 51.86 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 15.97 | 51.58 |
| KRH22880 | Soybean | nucleus | 48.32 | 51.49 |
| KRH29907 | Soybean | nucleus | 50.0 | 51.22 |
| CDY15734 | Canola | nucleus | 48.74 | 51.18 |
| AT4G30080.1 | Thale cress | nucleus | 47.9 | 51.04 |
| KRG95987 | Soybean | nucleus | 50.0 | 51.0 |
| Solyc11g069500.1.1 | Tomato | nucleus | 49.72 | 50.79 |
| KRH25023 | Soybean | nucleus | 49.86 | 50.78 |
| KRH26435 | Soybean | nucleus | 49.72 | 50.71 |
| PGSC0003DMT400020874 | Potato | nucleus | 49.58 | 50.64 |
| CDY04557 | Canola | nucleus | 48.32 | 50.37 |
| Zm00001d025871_P001 | Maize | nucleus | 41.18 | 50.0 |
| KRH34867 | Soybean | nucleus | 42.44 | 49.51 |
| AT2G28350.1 | Thale cress | nucleus | 48.04 | 49.49 |
| Bra011955.1-P | Field mustard | nucleus | 48.74 | 49.36 |
| KRG91907 | Soybean | nucleus | 40.9 | 49.24 |
| Solyc06g075150.2.1 | Tomato | nucleus | 45.24 | 48.14 |
| PGSC0003DMT400062489 | Potato | nucleus | 44.96 | 47.49 |
| Bra024109.1-P | Field mustard | nucleus | 45.38 | 46.69 |
| Solyc10g086130.1.1 | Tomato | nucleus | 38.24 | 43.26 |
| CDY46728 | Canola | nucleus | 47.48 | 40.17 |
| CDY30172 | Canola | nucleus | 45.38 | 39.04 |
| TraesCS2D01G577800.1 | Wheat | nucleus | 26.05 | 36.26 |
| TraesCS7D01G463000.1 | Wheat | nucleus | 15.41 | 31.07 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 14.01 | 30.77 |
| TraesCS1D01G337400.1 | Wheat | nucleus | 24.37 | 24.93 |
| TraesCS1D01G404400.1 | Wheat | nucleus | 25.21 | 24.49 |
| TraesCS3D01G245400.2 | Wheat | nucleus | 25.49 | 24.36 |
| TraesCS3D01G292100.1 | Wheat | plastid | 23.25 | 23.95 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF15 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:TraesCS2D01G376600 | EnsemblPlants:TraesCS2D01G376600.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:-:480776280..480778677
Molecular Weight (calculated)
76420.1 Da
IEP (calculated)
6.706
GRAVY (calculated)
-0.289
Length
714 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTFTELSCP AGGGGGGGGE DAPRSVDPQL WLACAGSMCT VPPVGAAVYY FPQGHAEQAA ATVDLSAARV PALLPCRVSA VRFMADPQTD EVFAKIRLAP
101: LRQGEPAVDV GDAAAEGRAL QDDRPKPASF AKTLTQSDAN NGGGFSVPRF CAETIFPPLD YSSEPPVQSI IVKDVHGDEF KFRHIYRGTP RRHLLTTGWS
201: NFVNQKKLLA GDSIVFLRSE GGEVHVGIRR AKRVFCDEGH SGWDHYRGLM RGNASSGDGG AATAKGKVPA EDVVAAARLA AAGQPFEVVY YPRASTPEFC
301: VRAGAVRAAM QVQWCPGMRF KMAFETEDSS RISWFMGTVA GIHAADPSRW PQSPWRLLQV TWDEPELLQN VKRVCPWLVE LVSSMPNLHL PSFSPPRKKP
401: RIPSYADFPF EGQLFHPPPP PFPPNHGHHH QQDQLLHHSF PFFPFPDSNG APLAGIQGAR HAQFGPSFSD LHLSNLQSSL LYAGGAVRRP AADHVAPRAP
501: RTISTDLTIG TSPAREDDNI TTRAPTKKAG GGDVKPAPTL LLFGQAILTE EQMKSSSAGG DAATSPVAGG CGSPNWDVEK APNLSEGSGS GSGVIQGSPS
601: NNNTSSWRLQ WFGDSSGQAA PELLGLEPGQ CKVFVESDAV GRILDLSALG SFEELYGRMS EMFGMECAEL RNHVLYRSAA GEVKHIGDEP FSAFVKSARR
701: LTILTDAGSD NIGG
101: LRQGEPAVDV GDAAAEGRAL QDDRPKPASF AKTLTQSDAN NGGGFSVPRF CAETIFPPLD YSSEPPVQSI IVKDVHGDEF KFRHIYRGTP RRHLLTTGWS
201: NFVNQKKLLA GDSIVFLRSE GGEVHVGIRR AKRVFCDEGH SGWDHYRGLM RGNASSGDGG AATAKGKVPA EDVVAAARLA AAGQPFEVVY YPRASTPEFC
301: VRAGAVRAAM QVQWCPGMRF KMAFETEDSS RISWFMGTVA GIHAADPSRW PQSPWRLLQV TWDEPELLQN VKRVCPWLVE LVSSMPNLHL PSFSPPRKKP
401: RIPSYADFPF EGQLFHPPPP PFPPNHGHHH QQDQLLHHSF PFFPFPDSNG APLAGIQGAR HAQFGPSFSD LHLSNLQSSL LYAGGAVRRP AADHVAPRAP
501: RTISTDLTIG TSPAREDDNI TTRAPTKKAG GGDVKPAPTL LLFGQAILTE EQMKSSSAGG DAATSPVAGG CGSPNWDVEK APNLSEGSGS GSGVIQGSPS
601: NNNTSSWRLQ WFGDSSGQAA PELLGLEPGQ CKVFVESDAV GRILDLSALG SFEELYGRMS EMFGMECAEL RNHVLYRSAA GEVKHIGDEP FSAFVKSARR
701: LTILTDAGSD NIGG
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.