Factsheet for Bra011955.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001634.1-P
Bra002479.1-P
Bra007632.1-P
Bra009867.1-P
Bra011955.1-P
Bra012190.1-P
Bra014419.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra021184.1-P
Bra022164.1-P
Bra025775.1-P
Bra026755.1-P
Bra027944.1-P
Bra034234.1-P
Bra036557.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Bra026755.1-P	AT1G15580.1	21734647
AT2G28350.1	Bra012190.1-P	AT1G19850.1	22096563
AT2G28350.1	Bra016492.1-P	AT1G19850.1	22096563
AT2G28350.1	Bra025775.1-P	AT1G19850.1	22096563
AT2G28350.1	Bra017362.1-P	AT1G34310.1	22096563
AT2G28350.1	Bra018124.1-P	AT1G34310.1	22096563
AT2G28350.1	Bra027944.1-P	AT1G34310.1	22096563
AT2G28350.1	Bra034234.1-P	AT1G34310.1	22096563
AT2G28350.1	Bra011955.1-P	AT2G28350.1	22096563
AT2G28350.1	Bra001634.1-P	AT3G16500.1	21734647
AT2G28350.1	Bra021184.1-P	AT3G16500.1	21734647
AT2G28350.1	Bra022164.1-P	AT3G16500.1	21734647
AT2G28350.1	Bra007632.1-P	AT3G61830.1	22096563
AT2G28350.1	Bra014419.1-P	AT3G61830.1	22096563
AT2G28350.1	Bra009867.1-P	AT5G25890.1	22096563
AT2G28350.1	Bra036557.1-P	AT5G25890.1	22096563
AT2G28350.1	Bra002479.1-P	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04557	Canola	nucleus	97.02	99.85
CDY15734	Canola	nucleus	95.04	98.53
AT2G28350.1	Thale cress	nucleus	88.79	90.33
VIT_06s0004g02750.t01	Wine grape	nucleus	65.11	64.56
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.21	64.29
KRH22880	Soybean	nucleus	58.58	61.64
GSMUA_Achr8P18930_001	Banana	nucleus	49.5	60.91
GSMUA_Achr4P18240_001	Banana	nucleus	52.2	60.63
GSMUA_Achr11P...	Banana	nucleus	46.38	60.44
KRH26435	Soybean	nucleus	59.57	60.0
GSMUA_Achr11P...	Banana	nucleus	51.21	59.77
Solyc11g069500.1.1	Tomato	nucleus	59.15	59.66
KRH25023	Soybean	nucleus	59.29	59.63
KRH29907	Soybean	nucleus	58.87	59.54
PGSC0003DMT400020874	Potato	nucleus	59.01	59.51
GSMUA_Achr5P18540_001	Banana	nucleus	43.4	58.96
GSMUA_Achr5P14630_001	Banana	nucleus	45.11	57.71
Os06t0685700-01	Rice	nucleus	57.02	57.43
HORVU3Hr1G081710.1	Barley	cytosol	8.51	57.14
GSMUA_Achr5P03960_001	Banana	nucleus	45.25	57.07
TraesCS7B01G346700.1	Wheat	nucleus	56.17	57.06
TraesCS7D01G436800.1	Wheat	nucleus	56.17	56.98
Zm00001d014013_P002	Maize	nucleus	51.63	56.52
EER88840	Sorghum	nucleus	56.74	56.42
TraesCS7A01G446900.1	Wheat	nucleus	55.74	56.06
HORVU7Hr1G101270.1	Barley	nucleus	55.32	55.95
Os04t0519700-01	Rice	nucleus	31.06	55.87
Bra011162.1-P	Field mustard	nucleus	51.06	55.64
HORVU5Hr1G024100.1	Barley	cytosol	11.91	55.63
EER94066	Sorghum	nucleus	53.9	55.15
TraesCS1A01G156600.1	Wheat	nucleus	53.62	54.94
TraesCS1D01G155100.1	Wheat	nucleus	53.62	54.94
TraesCS1B01G173700.1	Wheat	nucleus	53.76	54.85
Zm00001d032683_P001	Maize	nucleus	52.62	54.48
Os10t0479900-01	Rice	nucleus	53.9	54.44
HORVU1Hr1G041770.1	Barley	nucleus	53.05	54.36
Solyc06g075150.2.1	Tomato	nucleus	51.63	54.25
Zm00001d014507_P002	Maize	nucleus	55.6	54.07
PGSC0003DMT400062489	Potato	nucleus	51.63	53.85
Zm00001d000358_P001	Maize	nucleus	53.33	53.71
Os02t0628600-01	Rice	nucleus	50.92	52.72
EES05458	Sorghum	nucleus	52.2	51.98
Zm00001d017284_P001	Maize	nucleus	50.5	50.35
TraesCS6A01G222300.1	Wheat	nucleus	47.66	50.0
Zm00001d051172_P001	Maize	nucleus	50.21	49.79
TraesCS2D01G376600.1	Wheat	nucleus	49.36	48.74
TraesCS2B01G397300.1	Wheat	nucleus	48.94	48.73
Bra024109.1-P	Field mustard	nucleus	47.94	48.7
HORVU2Hr1G089670.1	Barley	nucleus	47.8	47.46
TraesCS6B01G258800.1	Wheat	mitochondrion	49.22	46.45
HORVU6Hr1G058890.2	Barley	mitochondrion	48.65	45.19
TraesCS6D01G212700.1	Wheat	plastid	48.79	44.73
KXG36152	Sorghum	nucleus	40.28	42.84
TraesCS2A01G380300.1	Wheat	nucleus	23.97	41.83
KXG26729	Sorghum	nucleus, plastid	41.84	40.86
Zm00001d025871_P001	Maize	nucleus	33.19	39.8
Bra003665.1-P	Field mustard	nucleus	30.21	39.01
Bra015651.1-P	Field mustard	nucleus	28.94	37.36
Bra029293.1-P	Field mustard	nucleus	12.48	36.21
HORVU7Hr1G021880.1	Barley	nucleus	10.92	34.84
Bra005465.1-P	Field mustard	nucleus	23.97	27.93
Bra021885.1-P	Field mustard	nucleus	21.7	27.72
HORVU2Hr1G089660.8	Barley	nucleus	12.2	26.46
Bra015374.1-P	Field mustard	nucleus	12.77	20.88

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01309	ProteinID:AFD01309.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra011955	EnsemblPlants:Bra011955.1	EnsemblPlants:Bra011955.1-P	ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0007389
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009738	GO:GO:0009743	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010154
GO:GO:0031540	GO:GO:0040007	GO:GO:0048366	GO:GO:0048441	GO:GO:0048442	GO:GO:0048589
GO:GO:0048829	GO:GO:0051301	UniProt:H9B4D6	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EMBL:JN979475	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF27	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002535797	SEG:seg

Description

AT2G28350 (E=0.0) ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor

Coordinates

chrA07:+:10990401..10992776

Molecular Weight (calculated)

77902.2 Da

IEP (calculated)

7.570

GRAVY (calculated)

-0.432

Length

705 amino acids

Sequence
(BLAST)

001: MEQERSLDPQ LWHACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADSET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS
101: PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR
201: SETGDLCVGI RRAKRGGLGS NGDNNSNSNN PYPGFSGFLR DDEITTSKLM MMKRNATGGG GNANDANAPG GRVRVEAVAE AVARAACGQA FEVVYYPRAS
301: TPEFCVKASD VRSAMRIRWC SGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP
401: RKKLRIPQPF DFPFDGTKFP MFSPGFAAGN NGGGESMCYL STNDNNNNAP AGIQGARQAQ QLFGSPSPSL LSDLNLNTFH SGNKLQQSSS SPAMFLSGFN
501: PRHHYDNIVV PRQTRDAEFN NNISCSLTIG NPGLVQDKKK SGSVKTHQFL LFGQPILTEQ QVMNRKRALE EEAEKEEKGG LTWNYGLQGI ETGHCKVFME
601: SEDVGRTLDL SVIGSYQELY RKLAEMFGIE ERSDLLTHVV YRDANGVTKR IGDEPFSDFM RATKRLTIKM DISGDNVRKT WITGIRNGEN GIDSSTKTGQ
701: LSIFA

Best Arabidopsis Sequence Match ( AT2G28350.1 )
(BLAST)

001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA

Arabidopsis Description

ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.