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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra009867.1-P
Bra011162.1-P
Bra024109.1-P
Bra026166.1-P
Bra036557.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G16500.1 Bra026166.1-P AT1G15050.1 21734647
AT3G16500.1 Bra011162.1-P AT4G30080.1 21734647
AT3G16500.1 Bra024109.1-P AT4G30080.1 21734647
AT3G16500.1 Bra009867.1-P AT5G25890.1 21734647
AT3G16500.1 Bra036557.1-P AT5G25890.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34957 Canola nucleus 100.0 100.0
CDY64626 Canola cytosol 96.28 96.28
AT3G16500.1 Thale cress nucleus 84.01 84.01
Bra001634.1-P Field mustard nucleus 81.41 80.51
Bra022164.1-P Field mustard nucleus 82.16 77.54
Bra014303.1-P Field mustard nucleus 64.68 64.44
Bra018938.1-P Field mustard nucleus 60.59 64.43
Bra009867.1-P Field mustard cytosol 31.23 47.73
Bra036557.1-P Field mustard nucleus 30.11 46.29
TraesCS1A01G122600.2 Wheat nucleus 38.66 46.22
TraesCS1D01G123500.1 Wheat nucleus 38.29 45.37
KRH09948 Soybean nucleus 52.79 44.38
GSMUA_Achr3P16300_001 Banana endoplasmic reticulum, golgi, mitochondrion, plastid 36.43 42.98
Os01t0190300-01 Rice nucleus 37.92 42.86
Solyc03g121060.2.1 Tomato nucleus 45.35 42.51
PGSC0003DMT400006709 Potato nucleus 44.61 42.4
EES17832 Sorghum nucleus 37.55 41.74
Zm00001d010360_P001 Maize cytosol, nucleus 35.32 41.67
KRH23388 Soybean nucleus 52.79 41.04
TraesCS3D01G110200.1 Wheat nucleus 34.94 40.87
TraesCS3B01G127400.1 Wheat nucleus 34.94 40.87
Zm00001d039513_P001 Maize cytosol, nucleus, plastid 34.57 40.61
GSMUA_Achr5P09310_001 Banana endoplasmic reticulum 35.32 40.43
HORVU1Hr1G028170.4 Barley cytosol, nucleus, plastid 36.8 40.08
Zm00001d037691_P003 Maize cytosol, nucleus 35.69 38.87
GSMUA_AchrUn_... Banana nucleus 44.24 38.64
Os02t0228900-01 Rice nucleus 42.75 38.33
TraesCS3A01G108400.1 Wheat cytosol, nucleus, peroxisome 35.69 38.1
HORVU3Hr1G019750.4 Barley cytosol, nucleus, plastid 34.2 37.55
KRH47203 Soybean nucleus 44.24 37.54
KRH44271 Soybean nucleus 43.49 37.38
OQU84670 Sorghum nucleus 39.03 35.96
Zm00001d016277_P002 Maize nucleus 39.03 35.12
Os01t0741900-01 Rice nucleus 42.75 34.33
TraesCS1B01G356600.1 Wheat cytosol 36.43 33.0
GSMUA_Achr7P13680_001 Banana nucleus 44.98 32.97
TraesCS3D01G276600.1 Wheat cytosol, mitochondrion, nucleus 40.89 32.84
VIT_09s0002g03410.t01 Wine grape nucleus 53.53 32.8
Os05t0523300-01 Rice nucleus 39.78 32.72
TraesCS1D01G345400.1 Wheat nucleus 35.69 32.54
TraesCS1A01G343300.1 Wheat nucleus 35.32 32.31
Bra022934.1-P Field mustard nucleus 29.0 32.23
TraesCS3B01G310500.1 Wheat cytosol, mitochondrion, nucleus 40.89 32.07
TraesCS3A01G276500.1 Wheat cytosol, mitochondrion, nucleus 40.52 31.96
Bra021257.1-P Field mustard cytosol 8.55 31.94
Bra011045.1-P Field mustard nucleus 28.62 31.69
Bra005508.1-P Field mustard nucleus 29.74 31.5
HORVU3Hr1G070620.5 Barley cytosol, mitochondrion, nucleus 41.26 31.44
KXG33336 Sorghum nucleus 42.38 31.23
Bra015326.1-P Field mustard nucleus 27.14 31.06
Bra001670.1-P Field mustard nucleus 16.73 30.41
Zm00001d043515_P002 Maize cytosol, mitochondrion, nucleus 40.15 30.25
KXG22376 Sorghum nucleus 38.29 29.86
Zm00001d038784_P001 Maize nucleus 39.03 29.75
OQU86163 Sorghum golgi, plastid 37.92 28.49
Bra022224.1-P Field mustard nucleus, plastid 16.73 28.48
Bra003484.1-P Field mustard nucleus, plastid 17.47 27.33
Bra040476.1-P Field mustard cytosol, plastid 17.1 26.44
Bra015289.1-P Field mustard nucleus 26.02 25.83
Bra007661.1-P Field mustard plastid 16.73 25.42
Bra032503.1-P Field mustard nucleus 28.25 24.52
Bra014411.1-P Field mustard nucleus, plastid 10.41 22.22
Bra011332.1-P Field mustard nucleus 17.84 20.78
Bra024187.1-P Field mustard plastid 29.0 19.6
Bra023958.1-P Field mustard nucleus 17.47 19.34
Protein Annotations
MapMan:11.2.2.1.2Gene3D:3.10.20.90InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra021184EnsemblPlants:Bra021184.1
EnsemblPlants:Bra021184.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4DXD8InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF2SUPFAM:SSF54277UniParc:UPI00025439F0::
Description
AT3G16500 (E=8e-125) PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor
Coordinates
chrA01:+:23505528..23506908
Molecular Weight (calculated)
30285.9 Da
IEP (calculated)
9.695
GRAVY (calculated)
-0.878
Length
269 amino acids
Sequence
(BLAST)
001: MEGCPRNREL CPKLLDLIPQ ARQWYHEENN NTDQEKKLEL RLGPPGGYDE DRPATKKNTE TRNNNIKKEA EDKSIFSPSK NHFSPSNRTN LPHISHKRTA
101: PGPVVGWPPV RSFRKNLATT SSSKLVNESS HVGQINKNGD GVKQVEPKRE GMFVKINMDS VPIGRKIDLN AYNSYEQLSF GVDKLFRGLL AAQRDTSGGE
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALRFG CSKQEKMRN
Best Arabidopsis Sequence Match ( AT3G16500.1 )
(BLAST)
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.