Factsheet for Bra007661.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001634.1-P
Bra001900.1-P
Bra009867.1-P
Bra012190.1-P
Bra016492.1-P
Bra016517.1-P
Bra017362.1-P
Bra018124.1-P
Bra021184.1-P
Bra022164.1-P
Bra025720.1-P
Bra025775.1-P
Bra027504.1-P
Bra027944.1-P
Bra033886.1-P
Bra034234.1-P
Bra035185.1-P
Bra036557.1-P
Bra039732.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62100.1	Bra016517.1-P	AT1G19220.1	21734647
AT3G62100.1	Bra025720.1-P	AT1G19220.1	21734647
AT3G62100.1	Bra012190.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra016492.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra025775.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra017362.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra018124.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra027944.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra034234.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra035185.1-P	AT1G80390.1	21734647
AT3G62100.1	Bra040476.1-P	AT2G46990.1	21734647
AT3G62100.1	Bra001634.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra021184.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra022164.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra001900.1-P	AT3G23050.1	21734647
AT3G62100.1	Bra033886.1-P	AT3G23050.1	21734647
AT3G62100.1	Bra039732.1-P	AT4G14560.1	21734647
AT3G62100.1	Bra009867.1-P	AT5G25890.1	21734647
AT3G62100.1	Bra036557.1-P	AT5G25890.1	21734647
AT3G62100.1	Bra027504.1-P	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11402	Canola	plastid	100.0	100.0
Bra003484.1-P	Field mustard	nucleus, plastid	93.79	96.51
AT3G62100.1	Thale cress	plastid	89.27	91.86
Bra014411.1-P	Field mustard	nucleus, plastid	64.41	90.48
Bra040476.1-P	Field mustard	cytosol, plastid	78.53	79.89
Bra021257.1-P	Field mustard	cytosol	20.34	50.0
VIT_07s0005g02550.t01	Wine grape	plastid	48.59	49.14
GSMUA_Achr8P29850_001	Banana	nucleus	44.07	44.32
KRH33660	Soybean	plastid	43.5	43.5
GSMUA_Achr9P16800_001	Banana	nucleus	42.37	43.1
KRG96613	Soybean	plastid	42.94	42.94
KRH68346	Soybean	plastid	42.94	42.22
KRH69143	Soybean	plastid	42.94	42.22
Os01t0286900-01	Rice	nucleus	27.12	41.74
Bra022224.1-P	Field mustard	nucleus, plastid	35.59	39.87
Bra001670.1-P	Field mustard	nucleus	33.33	39.86
EES00605	Sorghum	nucleus, plastid	39.55	36.27
Os02t0723400-02	Rice	nucleus	40.11	34.63
Zm00001d040541_P001	Maize	nucleus, plastid	33.9	33.15
Zm00001d008201_P001	Maize	cytosol	24.29	33.08
TraesCS1D01G084100.1	Wheat	nucleus, plastid	38.42	32.85
TraesCS1B01G100300.1	Wheat	plastid	38.42	28.69
TraesCS1A01G082700.2	Wheat	plastid	38.42	25.86
Bra036557.1-P	Field mustard	nucleus	24.86	25.14
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	28.81	24.64
Bra009867.1-P	Field mustard	cytosol	24.29	24.43
Bra015326.1-P	Field mustard	nucleus	29.94	22.55
Bra011045.1-P	Field mustard	nucleus	30.51	22.22
Bra015289.1-P	Field mustard	nucleus	32.77	21.4
Bra005508.1-P	Field mustard	nucleus	28.81	20.08
Bra022934.1-P	Field mustard	nucleus	27.12	19.83
Bra011332.1-P	Field mustard	nucleus	24.86	19.05
Bra018938.1-P	Field mustard	nucleus	25.42	17.79
Bra014303.1-P	Field mustard	nucleus	26.55	17.41
Bra023958.1-P	Field mustard	nucleus	23.73	17.28
Bra032503.1-P	Field mustard	nucleus	29.38	16.77
Bra021184.1-P	Field mustard	nucleus	25.42	16.73
Bra001634.1-P	Field mustard	nucleus	24.86	16.18
Bra022164.1-P	Field mustard	nucleus	24.86	15.44
Bra024187.1-P	Field mustard	plastid	33.9	15.08

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra007661	EnsemblPlants:Bra007661.1
EnsemblPlants:Bra007661.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4CTW7	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF15	SUPFAM:SSF54277	UniParc:UPI0002542AB5	SEG:seg	:

Description

AT3G62100 (E=8e-062) IAA30 | IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30); transcription factor

Coordinates

chrA09:+:30308468..30309397

Molecular Weight (calculated)

20016.1 Da

IEP (calculated)

4.322

GRAVY (calculated)

-0.613

Length

177 amino acids

Sequence
(BLAST)

001: MGRGRRSSSS SSIESSCKSN PFGGSSSNNT RNLSTDLRLG LSFGSSSGQY YNGGENHEYE VVAAADQEMI MEEEQEEDQN ECNSLGSFYV KVNMEGVPIG
101: RKIDLYSLSG YHDLITTLDY MFNASILWAE EEEMCSEKSH VLTYADKEDD WMMVGDVPWE MFLSSVRRLK ISRAYHY

Best Arabidopsis Sequence Match ( AT3G62100.1 )
(BLAST)

001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY

Arabidopsis Description

IAA30Auxin-responsive protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.