Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 49.76 | 49.76 |
| CDY46895 | Canola | cytosol | 14.98 | 43.06 |
| Bra021257.1-P | Field mustard | cytosol | 14.49 | 41.67 |
| TraesCS1A01G082700.2 | Wheat | plastid | 50.72 | 39.92 |
| TraesCS1B01G100300.1 | Wheat | plastid | 45.41 | 39.66 |
| Bra022224.1-P | Field mustard | nucleus, plastid | 29.95 | 39.24 |
| CDX92140 | Canola | nucleus, plastid | 29.95 | 39.24 |
| CDX95843 | Canola | plastid | 28.99 | 38.71 |
| Bra001670.1-P | Field mustard | nucleus | 27.54 | 38.51 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 31.88 | 37.93 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 28.5 | 37.34 |
| CDY71609 | Canola | nucleus, plastid | 28.02 | 36.94 |
| Os02t0723400-02 | Rice | nucleus | 36.23 | 36.59 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 30.92 | 36.36 |
| CDX82361 | Canola | cytosol, plastid | 27.54 | 36.31 |
| VIT_07s0005g02550.t01 | Wine grape | plastid | 30.43 | 36.0 |
| VIT_05s0020g01070.t01 | Wine grape | plastid | 31.88 | 33.33 |
| KRH33660 | Soybean | plastid | 27.54 | 32.2 |
| KRH69143 | Soybean | plastid | 27.54 | 31.67 |
| CDY27511 | Canola | cytosol, plastid | 26.57 | 31.61 |
| CDY48005 | Canola | cytosol, plastid | 26.57 | 31.61 |
| Bra040476.1-P | Field mustard | cytosol, plastid | 26.57 | 31.61 |
| AT2G46990.1 | Thale cress | plastid | 26.09 | 30.86 |
| CDY58757 | Canola | plastid | 25.6 | 30.81 |
| AT3G62100.1 | Thale cress | plastid | 25.6 | 30.81 |
| CDY25089 | Canola | plastid | 25.6 | 30.64 |
| Bra003484.1-P | Field mustard | nucleus, plastid | 25.12 | 30.23 |
| CDX67874 | Canola | plastid | 25.12 | 30.06 |
| KRG96613 | Soybean | plastid | 25.6 | 29.94 |
| KRH68346 | Soybean | plastid | 25.6 | 29.44 |
| CDY11402 | Canola | plastid | 24.64 | 28.81 |
| Bra007661.1-P | Field mustard | plastid | 24.64 | 28.81 |
| CDY46058 | Canola | plastid | 20.77 | 25.75 |
| KRH19441 | Soybean | endoplasmic reticulum, vacuole | 28.99 | 24.59 |
| KRH02508 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 29.47 | 23.46 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 19.32 | 22.99 |
| Bra014411.1-P | Field mustard | nucleus, plastid | 13.53 | 22.22 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 16.43 | 20.24 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 16.43 | 13.88 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 15.46 | 12.96 |
| HORVU6Hr1G091260.3 | Barley | nucleus | 17.39 | 12.81 |
| HORVU7Hr1G077110.10 | Barley | nucleus | 18.36 | 11.8 |
| HORVU4Hr1G016160.1 | Barley | plastid | 17.87 | 10.31 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 16.91 | 9.92 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | UniProt:A0A287ES79 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G017770 |
| EnsemblPlants:HORVU1Hr1G017770.6 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF15 | SUPFAM:SSF54277 | UniParc:UPI000B46C3DE | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287ES79]
Coordinates
chrchr1H:-:61271397..61272510
Molecular Weight (calculated)
23044.9 Da
IEP (calculated)
9.292
GRAVY (calculated)
-0.061
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: GPSPRAQPPV VMLLLLPHGR PRLRFHSKVS AVQTRDFTSG IKLLVHHLHW SISALAPLCT STDASIKPFL RSTLTTTTTM RPAASPDPAY GRSGGAGGHG
101: QQTLFVKVYM EGVPIGRKLD LLLLDGYDGL LAILGRMFNA SIIHPDTVGH DHQVVLGEKK ARHVVTYQDK EGDWLMAGDV PWEYVSTFWL QYYEFQTYPF
201: FHLTIIP
101: QQTLFVKVYM EGVPIGRKLD LLLLDGYDGL LAILGRMFNA SIIHPDTVGH DHQVVLGEKK ARHVVTYQDK EGDWLMAGDV PWEYVSTFWL QYYEFQTYPF
201: FHLTIIP
001: MGRGRSSSSS SIESSSKSNP FGASSSTRNL STDLRLGLSF GTSSGTQYFN GGYGYSVAAP AVEDAEYVAA VEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWE
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWE
Arabidopsis Description
IAA20Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W181]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.