Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G317200.1 | Wheat | cytosol | 100.0 | 72.18 |
| TraesCS5B01G317800.1 | Wheat | cytosol | 100.0 | 72.18 |
| TraesCS5D01G323500.1 | Wheat | cytosol | 98.96 | 71.43 |
| Os09t0527700-01 | Rice | nucleus | 88.54 | 60.71 |
| Zm00001d021279_P002 | Maize | plastid | 85.42 | 58.99 |
| EER97080 | Sorghum | plastid | 85.42 | 58.16 |
| KRH31615 | Soybean | nucleus | 40.62 | 53.42 |
| KRH71336 | Soybean | nucleus | 29.17 | 52.83 |
| CDX97478 | Canola | nucleus | 46.88 | 39.47 |
| Bra010338.1-P | Field mustard | cytosol, nucleus, plastid | 41.67 | 33.61 |
| CDY14220 | Canola | nucleus | 41.67 | 32.26 |
| CDY39982 | Canola | cytosol | 45.83 | 24.86 |
| HORVU1Hr1G081910.1 | Barley | plastid | 33.33 | 24.06 |
| Bra035185.1-P | Field mustard | cytosol | 46.88 | 23.94 |
| CDX87307 | Canola | cytosol | 46.88 | 23.94 |
| AT1G80390.1 | Thale cress | cytosol | 17.71 | 13.18 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A287RZX9 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G081180 |
| EnsemblPlants:HORVU5Hr1G081180.1 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF36 | SUPFAM:SSF54277 | UniParc:UPI000B472504 | : | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287RZX9]
Coordinates
chrchr5H:+:563466137..563467260
Molecular Weight (calculated)
10820.0 Da
IEP (calculated)
4.268
GRAVY (calculated)
0.072
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: AAFVKVSMDG TPYLRKVDVA AYGDYLELLQ ELNAMFYCCS IGLMDGYGQW EHAVVYEDGD GDWMLVGDVP WEMFVCSCRR MRVMRACEAR GLSANA
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.