CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010338.1-P	Field mustard	cytosol, nucleus, plastid	81.45	84.87
CDX97478	Canola	nucleus	62.9	68.42
CDY35250	Canola	cytosol, nucleus, plastid	42.74	60.92
KRH31615	Soybean	nucleus	26.61	45.21
HORVU5Hr1G081180.1	Barley	cytosol, nucleus	32.26	41.67
TraesCS5D01G323500.1	Wheat	cytosol	33.06	30.83
TraesCS5B01G317800.1	Wheat	cytosol	33.06	30.83
TraesCS5A01G317200.1	Wheat	cytosol	33.06	30.83
Os09t0527700-01	Rice	nucleus	34.68	30.71
KRH71336	Soybean	nucleus	12.9	30.19
EER97080	Sorghum	plastid	33.06	29.08
Zm00001d021279_P002	Maize	plastid	32.26	28.78
HORVU1Hr1G081910.1	Barley	plastid	26.61	24.81
TraesCS2B01G591500.1	Wheat	mitochondrion	27.42	22.97
CDY39982	Canola	cytosol	32.26	22.6
CDX87307	Canola	cytosol	32.26	21.28
TraesCS2A01G592700.1	Wheat	cytosol	26.61	20.89
TraesCS2D01G561800.1	Wheat	mitochondrion	26.61	19.64
TraesCS2A01G592900.1	Wheat	plastid	25.0	17.42

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078FIF5	UniProt:A0A078FIF5	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlants:CDY14220	ProteinID:CDY14220	ProteinID:CDY14220.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00078789001	InterPro:IPR000270	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF39	SUPFAM:SSF54277	UniParc:UPI0004EEF874

Description

BnaA08g13510DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIF5]

Coordinates

chrLK032041:+:263872..264633

Molecular Weight (calculated)

14007.6 Da

IEP (calculated)

4.460

GRAVY (calculated)

-0.487

Length

124 amino acids

Sequence
(BLAST)

001: MYNSATEEED KSGPETCLYV KVSMEGAPYL RKIDLKTYKS YVELSSALEK MFSCFTLGKF GSHGGCGRDG LNESRLTDLL RGSEYVVAYE DKDSDWMLVG
101: DVPWDSEGNG EMQKQELVRI IHIM

Best Arabidopsis Sequence Match ( AT4G29080.1 )
(BLAST)

001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN

Arabidopsis Description

IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.