Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71336 | Soybean | nucleus | 32.88 | 45.28 |
| HORVU5Hr1G081180.1 | Barley | cytosol, nucleus | 53.42 | 40.62 |
| CDX97478 | Canola | nucleus | 50.68 | 32.46 |
| TraesCS5D01G323500.1 | Wheat | cytosol | 53.42 | 29.32 |
| TraesCS5B01G317800.1 | Wheat | cytosol | 53.42 | 29.32 |
| TraesCS5A01G317200.1 | Wheat | cytosol | 53.42 | 29.32 |
| Os09t0527700-01 | Rice | nucleus | 54.79 | 28.57 |
| Zm00001d021279_P002 | Maize | plastid | 53.42 | 28.06 |
| EER97080 | Sorghum | plastid | 53.42 | 27.66 |
| Bra010338.1-P | Field mustard | cytosol, nucleus, plastid | 43.84 | 26.89 |
| CDY14220 | Canola | nucleus | 45.21 | 26.61 |
| CDY39982 | Canola | cytosol | 49.32 | 20.34 |
| HORVU1Hr1G081910.1 | Barley | plastid | 36.99 | 20.3 |
| CDX87307 | Canola | cytosol | 49.32 | 19.15 |
| Bra035185.1-P | Field mustard | cytosol | 49.32 | 19.15 |
| TraesCS2B01G591500.1 | Wheat | mitochondrion | 34.25 | 16.89 |
| TraesCS2A01G592700.1 | Wheat | cytosol | 35.62 | 16.46 |
| TraesCS2D01G561800.1 | Wheat | mitochondrion | 36.99 | 16.07 |
| TraesCS2A01G592900.1 | Wheat | plastid | 35.62 | 14.61 |
| AT1G80390.1 | Thale cress | cytosol | 19.18 | 10.85 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02006072 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlantsGene:GLYMA_10G000700 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | UniProt:K7LGN6 | EnsemblPlants:KRH31615 | ProteinID:KRH31615 | ProteinID:KRH31615.1 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF11 | SUPFAM:SSF54277 | UniParc:UPI00029565B0 |
Description
hypothetical protein
Coordinates
chr10:+:90195..90673
Molecular Weight (calculated)
8524.4 Da
IEP (calculated)
5.050
GRAVY (calculated)
-0.425
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MDGAPYLRKI DLRVYVQALE TMFKLTIGEY SKREGYKGSE YAPTYEDKDG DWMLVGDVPL DMFMTSCKRL RVM
001: MEVTNGLNLK DTELRLGLPG AQEEQQLELS CVRSNNKRKN NDSTEESAPP PAKTQIVGWP PVRSNRKNNN NKNVSYVKVS MDGAPYLRKI DLKMYKNYPE
101: LLKALENMFK FTVGEYSERE GYKGSGFVPT YEDKDGDWML VGDVPWDMFS SSCQKLRIMK GSEAPTAL
101: LLKALENMFK FTVGEYSERE GYKGSGFVPT YEDKDGDWML VGDVPWDMFS SSCQKLRIMK GSEAPTAL
Arabidopsis Description
IAA1Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q67YC2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.