Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G592700.1 | Wheat | cytosol | 67.42 | 75.95 |
| TraesCS2D01G561800.1 | Wheat | mitochondrion | 57.3 | 60.71 |
| TraesCS2B01G591500.1 | Wheat | mitochondrion | 45.51 | 54.73 |
| KRH31615 | Soybean | nucleus | 14.61 | 35.62 |
| KRH71336 | Soybean | nucleus | 9.55 | 32.08 |
| HORVU1Hr1G081910.1 | Barley | plastid | 23.6 | 31.58 |
| TraesCS5A01G317200.1 | Wheat | cytosol | 23.03 | 30.83 |
| CDY14220 | Canola | nucleus | 17.42 | 25.0 |
| CDX97478 | Canola | nucleus | 15.73 | 24.56 |
| Bra010338.1-P | Field mustard | cytosol, nucleus, plastid | 16.29 | 24.37 |
| CDY39982 | Canola | cytosol | 23.03 | 23.16 |
| Bra035185.1-P | Field mustard | cytosol | 22.47 | 21.28 |
| CDX87307 | Canola | cytosol | 22.47 | 21.28 |
| AT1G80390.1 | Thale cress | cytosol | 11.24 | 15.5 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF14 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS2A01G592900 | EnsemblPlants:TraesCS2A01G592900.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:-:779808777..779809440
Molecular Weight (calculated)
19467.1 Da
IEP (calculated)
7.509
GRAVY (calculated)
-0.453
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPRSQAVFI PPTWCRRLSS MESMSSGDGY PQLRTTVRQS WLSRHGADDP RLGARPRPRP STAIHPSPSM EGEAVDAELR LGPPDSGGAS AVASESKYVK
101: VSVEGARYQR TVDLRAYGGH AELRAALLGL AGQMLGLGVT YEDNDGDILL ADDLPWDMFV SDCRSIRIMR RSTMMTNS
101: VSVEGARYQR TVDLRAYGGH AELRAALLGL AGQMLGLGVT YEDNDGDILL ADDLPWDMFV SDCRSIRIMR RSTMMTNS
001: MANESNNLGL EITELRLGLP GDIVVSGESI SGKKRASPEV EIDLKCEPAK KSQVVGWPPV CSYRRKNSLE RTKSSYVKVS VDGAAFLRKI DLEMYKCYQD
101: LASALQILFG CYINFDDTLK ESECVPIYED KDGDWMLAGD VPWEMFLGSC KRLRIMKRSC NRG
101: LASALQILFG CYINFDDTLK ESECVPIYED KDGDWMLAGD VPWEMFLGSC KRLRIMKRSC NRG
Arabidopsis Description
IAA5Auxin-responsive protein IAA5 [Source:UniProtKB/Swiss-Prot;Acc:P33078]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.