Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35250 | Canola | cytosol, nucleus, plastid | 71.05 | 93.1 |
| KRH71336 | Soybean | nucleus | 30.7 | 66.04 |
| CDY14220 | Canola | nucleus | 68.42 | 62.9 |
| KRH31615 | Soybean | nucleus | 32.46 | 50.68 |
| HORVU5Hr1G081180.1 | Barley | cytosol, nucleus | 39.47 | 46.88 |
| TraesCS5D01G323500.1 | Wheat | cytosol | 39.47 | 33.83 |
| TraesCS5B01G317800.1 | Wheat | cytosol | 39.47 | 33.83 |
| TraesCS5A01G317200.1 | Wheat | cytosol | 39.47 | 33.83 |
| Os09t0527700-01 | Rice | nucleus | 40.35 | 32.86 |
| Zm00001d021279_P002 | Maize | plastid | 39.47 | 32.37 |
| EER97080 | Sorghum | plastid | 39.47 | 31.91 |
| CDY39982 | Canola | cytosol | 38.6 | 24.86 |
| HORVU1Hr1G081910.1 | Barley | plastid | 28.07 | 24.06 |
| CDX87307 | Canola | cytosol | 39.47 | 23.94 |
| TraesCS2B01G591500.1 | Wheat | mitochondrion | 27.19 | 20.95 |
| TraesCS2A01G592700.1 | Wheat | cytosol | 25.44 | 18.35 |
| TraesCS2D01G561800.1 | Wheat | mitochondrion | 26.32 | 17.86 |
| TraesCS2A01G592900.1 | Wheat | plastid | 24.56 | 15.73 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078EDQ6 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX97478 |
| ProteinID:CDX97478 | ProteinID:CDX97478.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00104668001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF18 | SUPFAM:SSF54277 | UniParc:UPI0004EEF1C6 | : | : |
Description
BnaC08g13430D
Coordinates
chrLK031899:-:1015280..1015948
Molecular Weight (calculated)
13000.8 Da
IEP (calculated)
8.195
GRAVY (calculated)
-0.351
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAPYLRKI DLKSYKSYVE LSGALEKMFS CFTIGKFGSH GGCGRDGLNE SRLTDLLRGS EYVVAYEEKD RDWMLVGDVP WEMFICSCQR LRIMKSSEAI
101: GLAPRVMEKC RSRN
101: GLAPRVMEKC RSRN
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.