Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71336 | Soybean | nucleus | 15.04 | 37.74 |
| KRH31615 | Soybean | nucleus | 20.3 | 36.99 |
| HORVU5Hr1G081180.1 | Barley | cytosol, nucleus | 24.06 | 33.33 |
| Bra010338.1-P | Field mustard | cytosol, nucleus, plastid | 25.56 | 28.57 |
| CDX97478 | Canola | nucleus | 24.06 | 28.07 |
| TraesCS2B01G591500.1 | Wheat | mitochondrion | 30.83 | 27.7 |
| CDY14220 | Canola | nucleus | 24.81 | 26.61 |
| TraesCS2A01G592700.1 | Wheat | cytosol | 28.57 | 24.05 |
| TraesCS2A01G592900.1 | Wheat | plastid | 31.58 | 23.6 |
| TraesCS2D01G561800.1 | Wheat | mitochondrion | 29.32 | 23.21 |
| CDY39982 | Canola | cytosol | 29.32 | 22.03 |
| Bra035185.1-P | Field mustard | cytosol | 29.32 | 20.74 |
| CDX87307 | Canola | cytosol | 29.32 | 20.74 |
| AT1G80390.1 | Thale cress | cytosol | 18.05 | 18.6 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | UniProt:A0A287GHB7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G081910 |
| EnsemblPlants:HORVU1Hr1G081910.1 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF14 | SUPFAM:SSF54277 | UniParc:UPI000B479714 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287GHB7]
Coordinates
chrchr1H:-:528282867..528284761
Molecular Weight (calculated)
14423.2 Da
IEP (calculated)
4.923
GRAVY (calculated)
-0.254
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMNKLAWGD LEAALLRGRG PDAASVGSAA GGRSAGVANW VNTELRLRPP SKYVKVMKRG APYLRKLDLT EYRGYEELSA ALGELFGLAG DFSVTYQLDE
101: DGDFMLAGDL PWGDFVSKCK KLTVSSPGEP IYE
101: DGDFMLAGDL PWGDFVSKCK KLTVSSPGEP IYE
001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
Arabidopsis Description
IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.