Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87307 | Canola | cytosol | 92.09 | 86.7 |
| AT1G80390.1 | Thale cress | cytosol | 44.63 | 61.24 |
| KRH71336 | Soybean | nucleus | 16.38 | 54.72 |
| KRH31615 | Soybean | nucleus | 20.34 | 49.32 |
| HORVU5Hr1G081180.1 | Barley | cytosol, nucleus | 24.86 | 45.83 |
| TraesCS5A01G317200.1 | Wheat | cytosol | 31.64 | 42.11 |
| TraesCS5B01G317800.1 | Wheat | cytosol | 31.64 | 42.11 |
| TraesCS5D01G323500.1 | Wheat | cytosol | 31.64 | 42.11 |
| Os09t0527700-01 | Rice | nucleus | 31.07 | 39.29 |
| Zm00001d021279_P002 | Maize | plastid | 30.51 | 38.85 |
| CDX97478 | Canola | nucleus | 24.86 | 38.6 |
| EER97080 | Sorghum | plastid | 30.51 | 38.3 |
| CDY35250 | Canola | cytosol, nucleus, plastid | 18.08 | 36.78 |
| CDY14220 | Canola | nucleus | 22.6 | 32.26 |
| TraesCS2B01G591500.1 | Wheat | mitochondrion | 24.86 | 29.73 |
| HORVU1Hr1G081910.1 | Barley | plastid | 22.03 | 29.32 |
| TraesCS2D01G561800.1 | Wheat | mitochondrion | 24.29 | 25.6 |
| TraesCS2A01G592700.1 | Wheat | cytosol | 21.47 | 24.05 |
| TraesCS2A01G592900.1 | Wheat | plastid | 23.16 | 23.03 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078HQ80 | UniProt:A0A078HQ80 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY39982 | ProteinID:CDY39982 | ProteinID:CDY39982.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00068871001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF34 | SUPFAM:SSF54277 | UniParc:UPI0004EDF7C4 |
Description
BnaC06g40600DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ80]
Coordinates
chrLK032461:+:242029..243221
Molecular Weight (calculated)
20086.3 Da
IEP (calculated)
7.134
GRAVY (calculated)
-0.258
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPEEYVRES GDLRGTELTL ALPGTSIIAS EGRQKSRNKR SFIETVDLKL GERHVNNSIA CNNFDRLVGW PPVRTVRARK YVKVAVDGAA YLRKVDLQMY
101: NCYDQLFAAL ENMFQGVVTI CKVTTELERN GEFMATYEDK DGDWMLVGDV PWMMFVESCK RMRLMKAADA MGLVLPS
101: NCYDQLFAAL ENMFQGVVTI CKVTTELERN GEFMATYEDK DGDWMLVGDV PWMMFVESCK RMRLMKAADA MGLVLPS
001: MSPEEYVRVW PDSGDLGGTE LTLALPGTPT NASEGPKKFG NKRRFLETVD LKLGEAHENN YISSMVTNDQ LVGWPPVATA RKTVRRKYVK VALDGAAYLR
101: KVDLGMYDCY GQLFTALENM FQGIITICK
101: KVDLGMYDCY GQLFTALENM FQGIITICK
Arabidopsis Description
IAA15indole-3-acetic acid inducible 15 [Source:TAIR;Acc:AT1G80390]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.