Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94777 | Canola | nucleus | 91.71 | 93.36 |
| CDY49005 | Canola | nucleus | 91.01 | 92.64 |
| CDY36940 | Canola | nucleus | 77.6 | 79.42 |
| CDY24168 | Canola | nucleus | 76.72 | 77.26 |
| CDY53570 | Canola | nucleus | 68.25 | 77.25 |
| CDY41720 | Canola | nucleus | 73.19 | 75.45 |
| CDY55738 | Canola | nucleus | 68.25 | 71.67 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 45.5 | 69.73 |
| CDY21993 | Canola | nucleus | 59.96 | 62.39 |
| CDY48583 | Canola | nucleus | 58.73 | 60.88 |
| CDY67714 | Canola | nucleus | 56.44 | 60.26 |
| CDX94484 | Canola | nucleus | 64.55 | 58.47 |
| CDY69758 | Canola | nucleus | 41.62 | 56.73 |
| CDX94528 | Canola | nucleus | 62.96 | 53.36 |
| CDY24162 | Canola | nucleus | 58.2 | 50.77 |
| AT1G35240.1 | Thale cress | nucleus | 49.56 | 47.47 |
| AT1G34390.1 | Thale cress | nucleus | 49.91 | 47.32 |
| AT1G34410.1 | Thale cress | nucleus | 50.26 | 47.03 |
| AT1G34310.1 | Thale cress | nucleus | 49.03 | 46.88 |
| AT1G35520.1 | Thale cress | nucleus | 48.85 | 46.71 |
| AT1G35540.1 | Thale cress | nucleus | 49.38 | 46.28 |
| AT1G34170.3 | Thale cress | nucleus | 44.44 | 46.15 |
| CDY47607 | Canola | nucleus | 39.86 | 37.42 |
| CDY10978 | Canola | nucleus | 40.56 | 36.8 |
| CDY50434 | Canola | nucleus | 40.39 | 36.64 |
| CDX80025 | Canola | nucleus | 36.86 | 35.79 |
| CDY03502 | Canola | nucleus | 37.57 | 35.5 |
| CDX95705 | Canola | nucleus | 33.69 | 35.05 |
| VIT_02s0025g01740.t01 | Wine grape | nucleus | 40.74 | 33.87 |
| KRH00001 | Soybean | nucleus | 39.33 | 33.58 |
| KRH49135 | Soybean | nucleus | 38.62 | 32.98 |
| KRH75716 | Soybean | nucleus | 40.04 | 32.8 |
| KRH65922 | Soybean | nucleus | 39.86 | 32.71 |
| CDY27291 | Canola | nucleus | 34.92 | 31.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.8 | 31.97 |
| Solyc08g008380.2.1 | Tomato | nucleus | 38.1 | 31.63 |
| PGSC0003DMT400031965 | Potato | nucleus | 36.51 | 31.6 |
| GSMUA_Achr10P... | Banana | nucleus | 36.86 | 31.33 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 35.98 | 30.63 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 35.98 | 30.54 |
| Solyc08g082630.2.1 | Tomato | nucleus | 34.57 | 30.43 |
| CDY33603 | Canola | nucleus | 35.1 | 30.11 |
| CDY65065 | Canola | nucleus | 34.92 | 29.95 |
| Os01t0236300-01 | Rice | nucleus | 34.92 | 28.33 |
| EES02172 | Sorghum | nucleus | 33.33 | 27.47 |
| Zm00001d039267_P005 | Maize | nucleus | 32.1 | 26.3 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 34.39 | 25.73 |
| TraesCS3B01G190100.1 | Wheat | nucleus | 34.39 | 25.73 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 34.39 | 25.69 |
| CDX86939 | Canola | nucleus | 37.57 | 25.06 |
| CDY00245 | Canola | nucleus | 37.57 | 25.03 |
| CDX87230 | Canola | nucleus | 36.51 | 25.0 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 34.57 | 24.5 |
| CDY67247 | Canola | nucleus | 35.98 | 23.97 |
| CDY16798 | Canola | nucleus | 36.68 | 23.72 |
| CDY39274 | Canola | nucleus | 31.39 | 22.85 |
| CDY07460 | Canola | nucleus | 31.39 | 22.79 |
| CDY31545 | Canola | nucleus | 28.57 | 21.4 |
| CDY53537 | Canola | nucleus | 30.69 | 21.38 |
| CDX80168 | Canola | nucleus | 28.57 | 21.34 |
| CDX74594 | Canola | nucleus | 30.69 | 21.25 |
| CDY12048 | Canola | nucleus | 29.63 | 19.83 |
| CDX90245 | Canola | nucleus | 29.63 | 19.72 |
| CDY09598 | Canola | nucleus | 29.81 | 19.43 |
| CDY02285 | Canola | nucleus | 29.81 | 19.36 |
| CDX83741 | Canola | nucleus | 28.57 | 19.15 |
| CDY62586 | Canola | nucleus | 28.4 | 19.03 |
| CDY01393 | Canola | nucleus | 28.04 | 18.38 |
| CDY61164 | Canola | nucleus | 27.87 | 18.35 |
| CDY29392 | Canola | nucleus | 28.22 | 18.26 |
| CDY39348 | Canola | nucleus | 28.04 | 18.09 |
| CDX96672 | Canola | nucleus | 29.45 | 16.37 |
| CDX83778 | Canola | nucleus | 29.45 | 16.37 |
| CDY26690 | Canola | nucleus | 29.63 | 16.02 |
| CDY41030 | Canola | nucleus | 29.45 | 15.78 |
| CDY16560 | Canola | nucleus | 28.4 | 15.45 |
| CDX92437 | Canola | nucleus | 28.04 | 15.29 |
| CDY45069 | Canola | nucleus | 28.57 | 14.56 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078IVU4 | UniProt:A0A078IVU4 |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY54111 | ProteinID:CDY54111 | ProteinID:CDY54111.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00013389001 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EE78F6 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g53900DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078IVU4]
Coordinates
chrLK033279:+:44050..46985
Molecular Weight (calculated)
64611.1 Da
IEP (calculated)
7.190
GRAVY (calculated)
-0.408
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGQIMHMQ PGFLATDGTN NYLYNQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPRH
101: ENNIQNINYF TKVLSASDTN KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWSFKH TLRGTPQRHL FTSGWNEFAK GKNLVVGDCF VFLRGENGES
201: RVGIRKSAHH QQHNIPSPVI SKQSMHHGVV ATALNAIERK CMFVVFYKPR SSQFLVNFDK FIDGVNRKFS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS
301: THWKDSEWRS LELQWNEAAT IPRPDKVSPW EIEPLTHSSN ILKSVFLKNK RQSEINDFGL EIGQTSIQSS VSYSFPSISK PNYNEQMVQA MKETSTTTEA
401: ASYRLFGVDL TVPAKTKDPV QPTHSYKKSK ISKIFEEEKV DHIQTKTKVQ LKHGSSAFDM VIDQVCMEGA VERTMDLTVF DGYNQLIDEL ERLFDIKDKL
501: HMHNQWKIVF INADGDMMLL GDDPWPTAQK IFIYSENDAK IVNADNKFAE GDPRLTTTIL PPDVNNN
101: ENNIQNINYF TKVLSASDTN KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWSFKH TLRGTPQRHL FTSGWNEFAK GKNLVVGDCF VFLRGENGES
201: RVGIRKSAHH QQHNIPSPVI SKQSMHHGVV ATALNAIERK CMFVVFYKPR SSQFLVNFDK FIDGVNRKFS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS
301: THWKDSEWRS LELQWNEAAT IPRPDKVSPW EIEPLTHSSN ILKSVFLKNK RQSEINDFGL EIGQTSIQSS VSYSFPSISK PNYNEQMVQA MKETSTTTEA
401: ASYRLFGVDL TVPAKTKDPV QPTHSYKKSK ISKIFEEEKV DHIQTKTKVQ LKHGSSAFDM VIDQVCMEGA VERTMDLTVF DGYNQLIDEL ERLFDIKDKL
501: HMHNQWKIVF INADGDMMLL GDDPWPTAQK IFIYSENDAK IVNADNKFAE GDPRLTTTIL PPDVNNN
001: MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR
Arabidopsis Description
ARF12Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.