Factsheet for AT1G35240.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G34410.1	Thale cress	nucleus	94.59	92.41
AT1G35520.1	Thale cress	nucleus	90.2	90.05
AT1G34390.1	Thale cress	nucleus	89.36	88.46
AT1G34310.1	Thale cress	nucleus	86.99	86.85
AT1G35540.1	Thale cress	nucleus	86.49	84.63
AT1G34170.3	Thale cress	nucleus	50.84	55.13
CDY53570	Canola	nucleus	44.59	52.69
Bra034234.1-P	Field mustard	nucleus	47.97	52.5
CDY21993	Canola	nucleus	48.14	52.29
CDY48583	Canola	nucleus	48.14	52.1
Bra027944.1-P	Field mustard	nucleus	48.31	52.09
CDY41720	Canola	nucleus	48.31	52.0
CDY49005	Canola	nucleus	48.65	51.71
CDY67714	Canola	nucleus	46.28	51.6
CDX94777	Canola	nucleus	48.14	51.17
CDY36940	Canola	nucleus	47.64	50.9
Bra018124.1-P	Field mustard	nucleus	47.13	50.27
Bra017362.1-P	Field mustard	nucleus	45.44	49.81
CDY55738	Canola	nucleus	45.27	49.63
CDY54111	Canola	nucleus	47.47	49.56
CDY24168	Canola	nucleus	47.13	49.56
CDX94748	Canola	endoplasmic reticulum, vacuole	30.57	48.92
CDY69758	Canola	nucleus	33.78	48.08
AT4G23980.1	Thale cress	nucleus	48.31	44.83
KRH49135	Soybean	nucleus	47.13	42.02
KRH00001	Soybean	nucleus	46.28	41.27
VIT_02s0025g01740.t01	Wine grape	nucleus	47.13	40.91
CDX94484	Canola	nucleus	42.74	40.42
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	42.4	40.35
KRH65922	Soybean	nucleus	46.45	39.8
AT3G61830.1	Thale cress	nucleus	40.37	39.7
GSMUA_AchrUn_...	Banana	nucleus	42.4	39.53
KRH75716	Soybean	nucleus	45.61	39.02
GSMUA_Achr10P...	Banana	nucleus	42.91	38.08
GSMUA_Achr2P19760_001	Banana	nucleus	42.74	37.87
Solyc08g082630.2.1	Tomato	nucleus	40.88	37.58
PGSC0003DMT400031965	Potato	nucleus	41.55	37.56
GSMUA_Achr7P24330_001	Banana	nucleus	41.72	37.09
Solyc08g008380.2.1	Tomato	nucleus	42.57	36.9
CDX94528	Canola	nucleus	40.37	35.73
AT1G59750.1	Thale cress	nucleus	40.03	35.64
Os01t0236300-01	Rice	nucleus	39.36	33.33
EES02172	Sorghum	nucleus	37.84	32.56
CDY24162	Canola	nucleus	35.14	32.0
Zm00001d039267_P005	Maize	nucleus	36.15	30.92
TraesCS3B01G190100.1	Wheat	nucleus	39.36	30.74
TraesCS3A01G159200.1	Wheat	nucleus	39.36	30.7
TraesCS3D01G166700.1	Wheat	nucleus	39.19	30.61
HORVU3Hr1G032230.6	Barley	nucleus, plastid	39.02	28.88
AT5G62000.1	Thale cress	nucleus	41.89	28.87
AT5G60450.1	Thale cress	nucleus	35.64	26.78
AT5G37020.1	Thale cress	nucleus	33.45	24.41
AT1G30330.3	Thale cress	nucleus	35.3	22.35
AT1G19850.1	Thale cress	nucleus	33.78	22.17
AT1G19220.1	Thale cress	nucleus	35.14	19.15
AT5G20730.1	Thale cress	nucleus	33.11	16.82

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:840413	UniProt:A0A2H1ZEC0
ProteinID:AEE31771.2	Symbol:ARF20	ArrayExpress:AT1G35240	EnsemblPlantsGene:AT1G35240	RefSeq:AT1G35240	TAIR:AT1G35240
RefSeq:AT1G35240-TAIR-G	EnsemblPlants:AT1G35240.1	TAIR:AT1G35240.1	InterPro:AUX/IAA_dom	Unigene:At.51187	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_001319148.1	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000848C5C3	SEG:seg	:

Description

ARF20auxin response factor 20 [Source:TAIR;Acc:AT1G35240]

Coordinates

chr1:-:12927303..12930523

Molecular Weight (calculated)

67234.6 Da

IEP (calculated)

7.474

GRAVY (calculated)

-0.375

Length

592 amino acids

Sequence
(BLAST)

001: METGNVVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVDAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQSENQFR PLVNSFTKVL TASDTSAYGG FFVPKKHAIE CLPPLDMSQP LPAQELLAKD LHGNQWRFRH SYRGTPQRHS LTTGWNEFTT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHALDNQC IFIVVYKPRS SQFIVSYDKF LDAMNNKFIV GSRFTMRFEG
301: DDFSERRYFG TIIGVNDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLMSALNV PRSSLLKNKR LREVNEFGQE IGQLSVASPM NTSLRYRDTT
401: EDAMNPSRLL MSYPVQPMPK LNYNNQMVTQ IEENITTKAV TNFRLFGVSL AIPLVIKDPI EEIGSDISKL TEGKKFGQSQ TLRSPIEIQS KQFGSTRTCT
501: KVQMQGVTIG RAVDLSVLNG YDQLILELEK LFDLKGQLQT RNQWKIAFTD SDGYEMLVGD DPWPEFCKMV KKILIYSKEE VKNLKSSKSL SS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.