Factsheet for AT5G60450.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80168	Canola	nucleus	84.14	87.35
CDY31545	Canola	nucleus	83.76	87.19
Bra002479.1-P	Field mustard	nucleus	83.63	86.94
KRH22924	Soybean	nucleus	33.25	71.78
VIT_06s0004g03130.t01	Wine grape	nucleus	64.59	63.78
KRH24914	Soybean	nucleus	60.91	60.61
KRG89021	Soybean	nucleus	60.79	60.48
KRH26391	Soybean	nucleus	60.03	59.2
Solyc11g069190.1.1	Tomato	nucleus	60.28	58.57
PGSC0003DMT400020839	Potato	nucleus	60.28	58.57
AT4G23980.1	Thale cress	nucleus	30.96	38.24
AT1G59750.1	Thale cress	nucleus	31.47	37.29
AT3G61830.1	Thale cress	nucleus	28.43	37.21
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	28.68	36.33
AT1G35240.1	Thale cress	nucleus	26.78	35.64
AT1G35540.1	Thale cress	nucleus	26.78	34.88
AT1G34390.1	Thale cress	nucleus	26.27	34.62
AT1G35520.1	Thale cress	nucleus	26.02	34.57
AT1G34310.1	Thale cress	nucleus	26.02	34.57
AT1G34410.1	Thale cress	nucleus	26.27	34.16
AT1G34170.3	Thale cress	nucleus	22.97	33.15
AT5G62000.1	Thale cress	nucleus	35.41	32.48
AT5G37020.1	Thale cress	nucleus	31.35	30.46
AT1G30330.3	Thale cress	nucleus	31.47	26.52
AT1G19850.1	Thale cress	nucleus	29.06	25.39
AT1G19220.1	Thale cress	nucleus	31.09	22.56
AT5G20730.1	Thale cress	nucleus	30.96	20.94

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:836166	ProteinID:AED97332.1
EMBL:AF013466	EMBL:AF344313	Symbol:ARF4	ArrayExpress:AT5G60450	EnsemblPlantsGene:AT5G60450	RefSeq:AT5G60450
TAIR:AT5G60450	RefSeq:AT5G60450-TAIR-G	EnsemblPlants:AT5G60450.1	TAIR:AT5G60450.1	EMBL:AY080832	EMBL:AY113977
Unigene:At.6797	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAB08228.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009791	GO:GO:0009987	GO:GO:0010050
GO:GO:0010158	GO:GO:0030154	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_200853.1
InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PO:PO:0000013	PO:PO:0000017	PO:PO:0000037
PO:PO:0000229	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0020144	PO:PO:0025022	PO:PO:0025281	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF20	UniProt:Q9ZTX9	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI00000A4C13	SEG:seg	:	:	:

Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]

Coordinates

chr5:-:24308255..24312784

Molecular Weight (calculated)

87288.9 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.466

Length

788 amino acids

Sequence
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGRLGISPS SSSSCSSGSS SSSSSTGSAS SIYSELWHAC AGPLTCLPKK GNVVVYFPQG HLEQDAMVSY
101: SSPLEIPKFD LNPQIVCRVV NVQLLANKDT DEVYTQVTLL PLQEFSMLNG EGKEVKELGG EEERNGSSSV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE
201: DCFAPLDYKQ QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRDEGGE LRLGIRRAAR PRNGLPDSII EKNSCSNILS
301: LVANAVSTKS MFHVFYSPRA THAEFVIPYE KYITSIRSPV CIGTRFRMRF EMDDSPERRC AGVVTGVCDL DPYRWPNSKW RCLLVRWDES FVSDHQERVS
401: PWEIDPSVSL PHLSIQSSPR PKRPWAGLLD TTPPGNPITK RGGFLDFEES VRPSKVLQGQ ENIGSASPSQ GFDVMNRRIL DFAMQSHANP VLVSSRVKDR
501: FGEFVDATGV NPACSGVMDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAAAP NPFAYQANKS SYYPLALHGI RSTHVPYQNP YNAGNQSSGP PSRAINFGEE
601: TRKFDAQNEG GLPNNVTADL PFKIDMMGKQ KGSELNMNAS SGCKLFGFSL PVETPASKPQ SSSKRICTKV HKQGSQVGRA IDLSRLNGYD DLLMELERLF
701: NMEGLLRDPE KGWRILYTDS ENDMMVVGDD PWHDFCNVVW KIHLYTKEEV ENANDDNKSC LEQAALMMEA SKSSSVSQPD SSPTITRV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.