CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89021
KRH00001
KRH05923
KRH06026
KRH09813
KRH17404
KRH22924
KRH23504
KRH24914
KRH26266
KRH26391
KRH44390
KRH47514
KRH49135
KRH51289
KRH65922
KRH75716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60450.1	KRH05923	AT1G19850.1	22096563
AT5G60450.1	KRH17404	AT1G19850.1	22096563
AT5G60450.1	KRH00001	AT1G34310.1	22096563
AT5G60450.1	KRH49135	AT1G34310.1	22096563
AT5G60450.1	KRH65922	AT1G34310.1	22096563
AT5G60450.1	KRH75716	AT1G34310.1	22096563
AT5G60450.1	KRH09813	AT1G52830.1	22096563
AT5G60450.1	KRH23504	AT1G52830.1	22096563
AT5G60450.1	KRH44390	AT1G52830.1	22096563
AT5G60450.1	KRH47514	AT1G52830.1	22096563
AT5G60450.1	KRH06026	AT1G59750.1	22096563
AT5G60450.1	KRH26266	AT1G59750.1	22096563
AT5G60450.1	KRH51289	AT1G59750.1	22096563
AT5G60450.1	KRG89021	AT5G60450.1	22096563
AT5G60450.1	KRH22924	AT5G60450.1	22096563
AT5G60450.1	KRH24914	AT5G60450.1	22096563
AT5G60450.1	KRH26391	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89021	Soybean	nucleus	94.44	94.44
KRH22924	Soybean	nucleus	38.51	83.56
KRH26391	Soybean	nucleus	79.55	78.85
VIT_06s0004g03130.t01	Wine grape	nucleus	71.21	70.68
Solyc11g069190.1.1	Tomato	nucleus	66.29	64.73
PGSC0003DMT400020839	Potato	nucleus	66.29	64.73
CDY31545	Canola	nucleus	59.22	61.96
CDX80168	Canola	nucleus	59.09	61.66
Bra002479.1-P	Field mustard	nucleus	58.96	61.61
AT5G60450.1	Thale cress	nucleus	60.61	60.91
KRH58711	Soybean	nucleus	23.99	48.35
KRH06026	Soybean	nucleus	34.34	40.9
KRH26266	Soybean	nucleus	34.22	40.75
KRH51289	Soybean	nucleus	33.33	39.17
KRH68924	Soybean	nucleus	31.06	37.16
KRH00001	Soybean	nucleus	30.56	36.45
KRH49135	Soybean	nucleus	30.18	35.99
KRH75716	Soybean	nucleus	31.06	35.55
KRH65922	Soybean	nucleus	30.93	35.46
KRH06451	Soybean	nucleus	31.94	35.34
KRH47893	Soybean	nucleus	31.57	34.92
KRH63855	Soybean	nucleus	36.99	34.76
KRH54110	Soybean	nucleus	36.87	34.64
KRH59742	Soybean	nucleus	37.5	34.62
KRH41062	Soybean	nucleus	36.99	34.43
KRH68102	Soybean	nucleus	25.13	33.73
KRG96367	Soybean	nucleus	28.16	32.94
KRH17251	Soybean	nucleus	31.44	29.54
KRH72896	Soybean	nucleus	31.31	29.28
KRG98044	Soybean	nucleus	30.81	29.01
KRH30740	Soybean	nucleus	30.81	28.91
KRH73577	Soybean	nucleus	31.94	28.24
KRH14545	Soybean	nucleus	31.82	28.12
KRH21113	Soybean	nucleus	31.57	27.9
KRH11131	Soybean	nucleus	31.57	27.84
KRH42603	Soybean	nucleus	30.93	27.07
KRH17404	Soybean	nucleus	31.19	26.56
KRH05923	Soybean	nucleus	30.93	26.26
KRH60117	Soybean	nucleus	32.07	23.11
KRH19355	Soybean	nucleus	31.69	22.19
KRH41404	Soybean	nucleus	31.19	22.19
KRH37536	Soybean	nucleus	31.19	21.96
KRH12587	Soybean	nucleus	31.06	21.93
KRH02575	Soybean	nucleus	31.44	21.92
KRH49070	Soybean	nucleus	30.68	21.89
KRH74145	Soybean	nucleus	30.3	21.74

Protein Annotations

EntrezGene:100783513	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02007190
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_12G071000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	UniProt:I1LQY7	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KRH24914
ProteinID:KRH24914	ProteinID:KRH24914.1	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF20	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI000296EEE2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:5197212..5204646

Molecular Weight (calculated)

87736.4 Da

IEP (calculated)

6.395

GRAVY (calculated)

-0.428

Length

792 amino acids

Sequence
(BLAST)

001: MEIDLNHEVT EAEKNAFCDR ECEKGAGAGA GITCWSSSTC SSSSAACVSS SYLELWHACA GPLTSLLKKG NVVVYFPQGH LEQVASFSPF TPLEIPTYDL
101: QPQIFCRVVN VQLLANKEND EVYTQVTLLP QPELEGMYSE GKELEELGAE EDGDERSPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ
201: RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGENGEL RLGIRRAVRP RNDLPESVIG SQNCYSNVLS SVANAISTKS
301: KFHVFYSPRA SHADFVVPYQ KYVKSIKNPV SIGTRFKMRF EMDESQERRC SSGTLIATSD LDPYRWAKSK WRCLMVRWDE DIETNHQDRV SPWEIDPSAP
401: LPPLSIQSSP RLKKLRTGLQ VASPSHLITA ARGSGLVGFE ESVRSPKVLQ GQENAGFVSF YYGCDTVTKP PGFEMSSPSH PNLGSAEVRK VSSSELNSVH
501: PFSYAGFVET NRFPRVLQGQ EICSLKSLTG KVDLNLGAWG MPNLSCTTFN LHQATKPNFQ PSLFPYGDIH QAGQASLFCS KSTTFQRENV PFNKPSTQAG
601: IIVNEVGRSD LPNEHKLQDN ISSAANMGVS NDNNVQGKVN ACKLFGFSLS GETTAQNLQN SAKRSCTKVH KQGSLVGRAI DLSRLSGYND LLSELERLFS
701: MEGLLKDPDK GWRILYTDSE NDIMVVGDDP WHEFCDVVSK IHIYTQEEVE KMTIGMISDD THSCLEEAPV IMEASKSSSV GQPDYSPTAV RV

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.