CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89021
KRG90334
KRG92429
KRH00001
KRH06451
KRH09813
KRH09948
KRH22924
KRH23388
KRH23504
KRH24914
KRH26391
KRH33583
KRH34377
KRH44271
KRH44390
KRH47203
KRH47514
KRH47893
KRH49135
KRH65922
KRH68924
KRH75716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61830.1	KRG92429	AT1G04250.1	21734647
AT3G61830.1	KRH34377	AT1G04250.1	21734647
AT3G61830.1	KRH00001	AT1G34310.1	22096563
AT3G61830.1	KRH49135	AT1G34310.1	22096563
AT3G61830.1	KRH65922	AT1G34310.1	22096563
AT3G61830.1	KRH75716	AT1G34310.1	22096563
AT3G61830.1	KRH09948	AT1G51950.1	22096563
AT3G61830.1	KRH23388	AT1G51950.1	22096563
AT3G61830.1	KRH44271	AT1G51950.1	22096563
AT3G61830.1	KRH47203	AT1G51950.1	22096563
AT3G61830.1	KRH09813	AT1G52830.1	22096563
AT3G61830.1	KRH23504	AT1G52830.1	22096563
AT3G61830.1	KRH44390	AT1G52830.1	22096563
AT3G61830.1	KRH47514	AT1G52830.1	22096563
AT3G61830.1	KRH09813	AT3G15540.1	22096563
AT3G61830.1	KRH23504	AT3G15540.1	22096563
AT3G61830.1	KRH44390	AT3G15540.1	22096563
AT3G61830.1	KRH47514	AT3G15540.1	22096563
AT3G61830.1	KRH06451	AT3G61830.1	22096563
AT3G61830.1	KRH47893	AT3G61830.1	22096563
AT3G61830.1	KRH68924	AT3G61830.1	22096563
AT3G61830.1	KRG90334	AT5G57420.1	21734647
AT3G61830.1	KRH33583	AT5G57420.1	21734647
AT3G61830.1	KRG89021	AT5G60450.1	22096563
AT3G61830.1	KRH22924	AT5G60450.1	22096563
AT3G61830.1	KRH24914	AT5G60450.1	22096563
AT3G61830.1	KRH26391	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06451	Soybean	nucleus	95.53	95.53
KRH68924	Soybean	nucleus	67.46	72.96
VIT_15s0046g00290.t01	Wine grape	nucleus	62.01	63.25
Bra014419.1-P	Field mustard	nucleus	47.49	61.26
Bra004530.1-P	Field mustard	nucleus	49.02	60.1
PGSC0003DMT400000345	Potato	nucleus	57.4	60.0
CDX80025	Canola	nucleus	48.74	59.76
Solyc01g096070.2.1	Tomato	nucleus	57.26	59.51
CDX95705	Canola	nucleus	44.97	59.08
AT3G61830.1	Thale cress	nucleus	49.44	58.8
KRH75716	Soybean	nucleus	55.17	57.08
KRH49135	Soybean	nucleus	52.93	57.08
KRH65922	Soybean	nucleus	54.75	56.73
KRH00001	Soybean	nucleus	51.82	55.87
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	48.32	55.63
GSMUA_Achr2P19760_001	Banana	nucleus	50.0	53.59
GSMUA_Achr10P...	Banana	nucleus	49.58	53.22
GSMUA_AchrUn_...	Banana	nucleus	46.93	52.91
GSMUA_Achr7P24330_001	Banana	nucleus	48.04	51.65
KRH26266	Soybean	nucleus	46.23	49.77
KRH06026	Soybean	nucleus	46.23	49.77
KRH51289	Soybean	nucleus	45.53	48.37
KRH58711	Soybean	nucleus	26.12	47.58
KRH22924	Soybean	nucleus	21.93	43.01
EES02172	Sorghum	nucleus	41.06	42.73
Os01t0236300-01	Rice	nucleus	41.34	42.35
Zm00001d039267_P005	Maize	nucleus	39.39	40.75
TraesCS3A01G159200.1	Wheat	nucleus	41.34	39.0
TraesCS3B01G190100.1	Wheat	nucleus	41.2	38.92
TraesCS3D01G166700.1	Wheat	nucleus	41.06	38.79
KRH41062	Soybean	nucleus	45.25	38.07
KRH63855	Soybean	nucleus	44.55	37.84
KRH59742	Soybean	nucleus	45.25	37.76
KRH54110	Soybean	nucleus	43.99	37.37
HORVU3Hr1G032230.6	Barley	nucleus, plastid	40.5	36.25
KRH68102	Soybean	nucleus	28.35	34.41
KRG96367	Soybean	nucleus	32.12	33.97
Bra007632.1-P	Field mustard	nucleus	48.88	33.18
KRG89021	Soybean	nucleus	35.06	31.69
KRH24914	Soybean	nucleus	34.92	31.57
KRH26391	Soybean	nucleus	33.8	30.29
KRH30740	Soybean	nucleus	34.22	29.03
KRG98044	Soybean	nucleus	34.08	29.01
KRH17251	Soybean	nucleus	34.08	28.94
KRH72896	Soybean	nucleus	34.08	28.81
KRH21113	Soybean	nucleus	35.34	28.24
KRH11131	Soybean	nucleus	34.78	27.73
KRH42603	Soybean	nucleus	34.64	27.4
KRH73577	Soybean	nucleus	33.52	26.79
KRH14545	Soybean	nucleus	33.38	26.67
KRH05923	Soybean	nucleus	32.54	24.97
KRH17404	Soybean	nucleus	32.4	24.95
KRH60117	Soybean	nucleus	34.22	22.29
KRH41404	Soybean	nucleus	33.66	21.65
KRH37536	Soybean	nucleus	33.66	21.42
KRH12587	Soybean	nucleus	33.52	21.39
KRH02575	Soybean	nucleus	33.66	21.21
KRH49070	Soybean	nucleus	32.82	21.17
KRH19355	Soybean	nucleus	33.38	21.13
KRH74145	Soybean	nucleus	31.98	20.74

Protein Annotations

EntrezGene:100790981	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02004179
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_07G054800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:K7KZU2
EnsemblPlants:KRH47893	ProteinID:KRH47893	ProteinID:KRH47893.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000296AE50	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:4807469..4811750

Molecular Weight (calculated)

79534.6 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.528

Length

716 amino acids

Sequence
(BLAST)

001: MAHLECNLGG PGSSGTSQPE KGLKDDDLYR ELWKLCAGPL VDVPRNGDRV FYFPQGHMEQ LQASTDQELN QEIPHFNLPA KIFCRVVNIQ LLAEQDTDEV
101: YACIALLPES DQTEPTNPDP NVSEAPKQKF HSFCKILTAS DTSTHGGFSV LRKHATECLP ELDMTQSTPT QELAAKDLHG FEWKFKHIYR GQPRRHLLTT
201: GWSTFVASKR LVAGDAFVFL RGEHGQLRVG VRRLARQQSP MPSSVISSQS MHLGVLATAS HAVMTRTMFL VYYKPRTSQF IVGLNKYLEA VNNKFSLSMR
301: FKMRFEGDDS PERRFSGTIV GVGDVSAGWS NSQWRSLKVQ WDEPATIPRP DRVSCWEIEP FVASTALNVT QPAVKGKRSR PADVLSSAAS GFWYHGSSNE
401: LSQLGAAAEV QSKENQVVPC SLRQKDIINS NPINANNSSI STRVRMEGVW PSSPHLNATP NLFSDPNNNN SNNGVSARSL ISGYPNVPSR SSDGPTCDGV
501: EDGKKTENSL DCWLFGVNLT NNCSNVITTP SEREQRGPSS SVVLSGPKES IPAAACETER VQTPNYSLSN KGQKQIISEA SPNQWQNKQA TVLSMRTRTK
601: VQMQGVAVGR AFDLTTLSGY DDLIDELEKL FEIRGELRSQ DKWAVTFTDD ENDMMLAGDD PWPEFCNMVK RIFICSREDL KKMKCCKLPA SSSEVEEILL
701: SPDSQNRDET QQSHMP

Best Arabidopsis Sequence Match ( AT3G61830.1 )
(BLAST)

001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG

Arabidopsis Description

ARF18Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.