CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89021
KRG90334
KRG92429
KRH00001
KRH06451
KRH09813
KRH09948
KRH22924
KRH23388
KRH23504
KRH24914
KRH26391
KRH33583
KRH34377
KRH44271
KRH44390
KRH47203
KRH47514
KRH47893
KRH49135
KRH65922
KRH68924
KRH75716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61830.1	KRG92429	AT1G04250.1	21734647
AT3G61830.1	KRH34377	AT1G04250.1	21734647
AT3G61830.1	KRH00001	AT1G34310.1	22096563
AT3G61830.1	KRH49135	AT1G34310.1	22096563
AT3G61830.1	KRH65922	AT1G34310.1	22096563
AT3G61830.1	KRH75716	AT1G34310.1	22096563
AT3G61830.1	KRH09948	AT1G51950.1	22096563
AT3G61830.1	KRH23388	AT1G51950.1	22096563
AT3G61830.1	KRH44271	AT1G51950.1	22096563
AT3G61830.1	KRH47203	AT1G51950.1	22096563
AT3G61830.1	KRH09813	AT1G52830.1	22096563
AT3G61830.1	KRH23504	AT1G52830.1	22096563
AT3G61830.1	KRH44390	AT1G52830.1	22096563
AT3G61830.1	KRH47514	AT1G52830.1	22096563
AT3G61830.1	KRH09813	AT3G15540.1	22096563
AT3G61830.1	KRH23504	AT3G15540.1	22096563
AT3G61830.1	KRH44390	AT3G15540.1	22096563
AT3G61830.1	KRH47514	AT3G15540.1	22096563
AT3G61830.1	KRH06451	AT3G61830.1	22096563
AT3G61830.1	KRH47893	AT3G61830.1	22096563
AT3G61830.1	KRH68924	AT3G61830.1	22096563
AT3G61830.1	KRG90334	AT5G57420.1	21734647
AT3G61830.1	KRH33583	AT5G57420.1	21734647
AT3G61830.1	KRG89021	AT5G60450.1	22096563
AT3G61830.1	KRH22924	AT5G60450.1	22096563
AT3G61830.1	KRH24914	AT5G60450.1	22096563
AT3G61830.1	KRH26391	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06451	Soybean	nucleus	73.26	67.74
KRH47893	Soybean	nucleus	72.96	67.46
Bra014419.1-P	Field mustard	nucleus	51.21	61.08
VIT_15s0046g00290.t01	Wine grape	nucleus	64.65	60.97
Bra004530.1-P	Field mustard	nucleus	53.47	60.62
CDX80025	Canola	nucleus	53.02	60.1
AT3G61830.1	Thale cress	nucleus	53.17	58.47
CDX95705	Canola	nucleus	48.04	58.35
PGSC0003DMT400000345	Potato	nucleus	59.67	57.66
Solyc01g096070.2.1	Tomato	nucleus	59.52	57.18
KRH75716	Soybean	nucleus	59.52	56.94
KRH65922	Soybean	nucleus	59.37	56.87
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	53.02	56.43
KRH49135	Soybean	nucleus	56.34	56.17
KRH00001	Soybean	nucleus	55.29	55.12
GSMUA_Achr2P19760_001	Banana	nucleus	53.78	53.29
GSMUA_Achr10P...	Banana	nucleus	53.32	52.92
GSMUA_AchrUn_...	Banana	nucleus	49.09	51.18
GSMUA_Achr7P24330_001	Banana	nucleus	50.6	50.3
KRH26266	Soybean	nucleus	50.3	50.08
KRH06026	Soybean	nucleus	50.3	50.08
KRH51289	Soybean	nucleus	49.7	48.81
KRH58711	Soybean	nucleus	28.25	47.58
KRH22924	Soybean	nucleus	23.87	43.29
EES02172	Sorghum	nucleus	44.41	42.73
Os01t0236300-01	Rice	nucleus	44.26	41.92
Zm00001d039267_P005	Maize	nucleus	41.39	39.6
TraesCS3A01G159200.1	Wheat	nucleus	44.71	39.0
TraesCS3D01G166700.1	Wheat	nucleus	44.56	38.92
TraesCS3B01G190100.1	Wheat	nucleus	44.56	38.92
HORVU3Hr1G032230.6	Barley	nucleus, plastid	44.11	36.5
KRH63855	Soybean	nucleus	46.37	36.42
KRH41062	Soybean	nucleus	46.37	36.08
KRH54110	Soybean	nucleus	45.92	36.06
KRH59742	Soybean	nucleus	46.68	36.01
KRG96367	Soybean	nucleus	35.05	34.27
KRH68102	Soybean	nucleus	29.76	33.39
Bra007632.1-P	Field mustard	nucleus	51.81	32.51
KRG89021	Soybean	nucleus	37.31	31.19
KRH24914	Soybean	nucleus	37.16	31.06
KRH26391	Soybean	nucleus	36.25	30.04
KRH17251	Soybean	nucleus	35.95	28.23
KRH30740	Soybean	nucleus	35.95	28.2
KRH72896	Soybean	nucleus	35.8	27.98
KRG98044	Soybean	nucleus	35.35	27.82
KRH21113	Soybean	nucleus	37.01	27.34
KRH11131	Soybean	nucleus	37.01	27.28
KRH42603	Soybean	nucleus	37.01	27.07
KRH73577	Soybean	nucleus	35.95	26.56
KRH14545	Soybean	nucleus	35.65	26.34
KRH17404	Soybean	nucleus	35.2	25.05
KRH05923	Soybean	nucleus	35.2	24.97
KRH60117	Soybean	nucleus	35.35	21.29
KRH49070	Soybean	nucleus	35.2	20.99
KRH12587	Soybean	nucleus	35.35	20.86
KRH37536	Soybean	nucleus	35.05	20.62
KRH74145	Soybean	nucleus	34.29	20.56
KRH41404	Soybean	nucleus	34.44	20.49
KRH19355	Soybean	nucleus	34.89	20.42
KRH02575	Soybean	nucleus	35.05	20.42

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02002128	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_03G258300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:K7KH37	EnsemblPlants:KRH68924
ProteinID:KRH68924	ProteinID:KRH68924.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI00023379BD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:45279571..45284334

Molecular Weight (calculated)

74077.7 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.523

Length

662 amino acids

Sequence
(BLAST)

001: MAGVGDGDLY TQLWKLCAGP LVDVPRQGER VFYFPQGHME QLQASTNQGL NQEIPHFNLP PKILCRVVHI QLLAEQETDE VYARITLLPE SNQEEPTSPD
101: PSPPETQKQV FHTFSKILTA SDTSTHGGFS VLRRHATECL PQLDMTQTTP SQELVAEDLH GFEWKFKHIF RGQPRRHLLT TGWSTFVTSK KLVAGDAFVF
201: LRGENGELRV GVRRVARQQS PMPSSVISSQ SMHLGVLATA SHAFLTSTMF VVYYKPRTSQ FIIGVNKYLE AENNKFSVGM RFKMRFEVED SPERRFSGTI
301: VGVGDVSPGW WNSQWRSLKV QWDEPAIIPR PERVSSWEIE PFAASTALNV TQQLVKSKRS RTEVSSSEIA PNSPALAFWY RGPQDPTALG SSTEVQSNEN
401: PVVWSTRQKE INGNPMNSSS KVRVEGMRPS SPHSKPNLFM DPKNCKAVPA QSTVSSRPKD DLAHDPMECA KRSSQNPMNC WIFGVNLTNN ITKNVTLPDK
501: EQLGCPAIIP SGPKDSIPVA ACETEAGQNP YYSLSNKEHK QNISDGSPSA SQRHTRTRTK VQMQGIAVGR AVDLTVLKDY DDLIDELEKM FDIKGELQMQ
601: TKWAITFTDD GNDMMLVGDD PWPEFCTVVK RIFICSREDV KKMKSKHSSS SSVGEETLLS QD

Best Arabidopsis Sequence Match ( AT3G61830.1 )
(BLAST)

001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG

Arabidopsis Description

ARF18Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.