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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG90903
KRG92429
KRG92430
KRH05923
KRH06026
KRH06451
KRH09813
KRH17404
KRH23504
KRH26266
KRH34375
KRH34377
KRH35895
KRH44390
KRH47514
KRH47893
KRH51289
KRH52428
KRH61758
KRH68924
KRH69048

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19850.1 KRG92429 AT1G04250.1 21734647
AT1G19850.1 KRH34377 AT1G04250.1 21734647
AT1G19850.1 KRG90903 AT1G15050.1 21734647
AT1G19850.1 KRH35895 AT1G15050.1 21734647
AT1G19850.1 KRH05923 AT1G19850.1 14729917
AT1G19850.1 KRH17404 AT1G19850.1 14729917
AT1G19850.1 KRH05923 AT1G19850.1 21734647
AT1G19850.1 KRH17404 AT1G19850.1 21734647
AT1G19850.1 KRH05923 AT1G19850.1 22096563
AT1G19850.1 KRH17404 AT1G19850.1 22096563
AT1G19850.1 KRH05923 AT1G19850.1 24485461
AT1G19850.1 KRH17404 AT1G19850.1 24485461
AT1G19850.1 KRH09813 AT1G52830.1 14729917
AT1G19850.1 KRH23504 AT1G52830.1 14729917
AT1G19850.1 KRH44390 AT1G52830.1 14729917
AT1G19850.1 KRH47514 AT1G52830.1 14729917
AT1G19850.1 KRH06026 AT1G59750.1 22096563
AT1G19850.1 KRH26266 AT1G59750.1 22096563
AT1G19850.1 KRH51289 AT1G59750.1 22096563
AT1G19850.1 KRH09813 AT3G15540.1 14729917
AT1G19850.1 KRH23504 AT3G15540.1 14729917
AT1G19850.1 KRH44390 AT3G15540.1 14729917
AT1G19850.1 KRH47514 AT3G15540.1 14729917
AT1G19850.1 KRH09813 AT3G15540.1 22096563
AT1G19850.1 KRH23504 AT3G15540.1 22096563
AT1G19850.1 KRH44390 AT3G15540.1 22096563
AT1G19850.1 KRH47514 AT3G15540.1 22096563
AT1G19850.1 KRG92429 AT3G23050.1 21734647
AT1G19850.1 KRH34377 AT3G23050.1 21734647
AT1G19850.1 KRH06451 AT3G61830.1 22096563
AT1G19850.1 KRH47893 AT3G61830.1 22096563
AT1G19850.1 KRH68924 AT3G61830.1 22096563
AT1G19850.1 KRG92430 AT4G14560.1 14729917
AT1G19850.1 KRH34375 AT4G14560.1 14729917
AT1G19850.1 KRH69048 AT4G14560.1 14729917
AT1G19850.1 KRG92430 AT4G14560.1 22096563
AT1G19850.1 KRH34375 AT4G14560.1 22096563
AT1G19850.1 KRH69048 AT4G14560.1 22096563
AT1G19850.1 KRG92430 AT4G14560.1 9342315
AT1G19850.1 KRH34375 AT4G14560.1 9342315
AT1G19850.1 KRH69048 AT4G14560.1 9342315
AT1G19850.1 KRH52428 AT4G32280.1 21734647
AT1G19850.1 KRH61758 AT4G32280.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH17404 Soybean nucleus 95.61 95.91
Bra025775.1-P Field mustard nucleus 40.51 80.43
VIT_18s0001g13930.t01 Wine grape nucleus 69.45 68.0
KRH58711 Soybean nucleus 27.12 64.38
CDY61164 Canola nucleus 57.02 61.79
Bra016492.1-P Field mustard nucleus 55.31 61.72
CDY62586 Canola nucleus 55.73 61.47
PGSC0003DMT400009660 Potato nucleus 61.2 61.46
CDY01393 Canola nucleus 56.81 61.27
CDX83741 Canola nucleus 55.52 61.23
Solyc04g081240.2.1 Tomato nucleus 60.99 61.18
Bra012190.1-P Field mustard nucleus 56.81 61.13
CDY29392 Canola nucleus 57.34 61.07
CDY39348 Canola nucleus 56.91 60.41
AT1G19850.1 Thale cress nucleus 58.2 60.2
GSMUA_Achr1P20040_001 Banana nucleus 43.94 52.43
GSMUA_Achr6P36980_001 Banana nucleus 45.44 49.42
EES13038 Sorghum nucleus 45.66 45.03
Os04t0664400-01 Rice nucleus 43.73 44.35
KRH22924 Soybean nucleus 17.26 44.11
Zm00001d026540_P002 Maize nucleus 45.23 44.0
TraesCS2D01G491200.2 Wheat nucleus 44.91 43.87
TraesCS2B01G519200.2 Wheat nucleus 44.8 43.77
TraesCS2A01G491000.1 Wheat nucleus 44.8 43.77
Zm00001d001945_P002 Maize nucleus 44.37 43.67
HORVU2Hr1G109650.18 Barley nucleus 44.59 43.47
KRH30740 Soybean nucleus 37.62 41.59
GSMUA_Achr1P20000_001 Banana nucleus 43.09 41.4
KRG98044 Soybean nucleus 37.3 41.38
KRH72896 Soybean nucleus 37.41 41.2
KRH17251 Soybean nucleus 37.08 41.04
KRH73577 Soybean nucleus 38.69 40.29
KRH42603 Soybean nucleus 38.59 39.78
KRH14545 Soybean nucleus 38.16 39.73
KRH21113 Soybean nucleus 37.83 39.4
KRH11131 Soybean nucleus 37.83 39.31
KRH06026 Soybean nucleus 26.69 37.44
KRH51289 Soybean nucleus 27.01 37.39
KRH26266 Soybean nucleus 26.58 37.29
GSMUA_Achr1P20010_001 Banana plasma membrane, plastid 41.91 37.24
KRH75716 Soybean nucleus 26.26 35.4
KRH68924 Soybean nucleus 24.97 35.2
KRH00001 Soybean nucleus 24.76 34.79
KRH65922 Soybean nucleus 25.51 34.44
KRH37536 Soybean nucleus 41.48 34.4
KRH49135 Soybean nucleus 24.44 34.34
KRH02575 Soybean nucleus 41.48 34.07
KRH49070 Soybean nucleus 40.51 34.05
KRH12587 Soybean nucleus 40.94 34.05
KRH19355 Soybean nucleus 41.26 34.04
KRH60117 Soybean nucleus 40.09 34.03
KRH41404 Soybean nucleus 39.76 33.33
KRH74145 Soybean nucleus 39.34 33.24
KRH06451 Soybean nucleus 25.19 32.82
KRH47893 Soybean nucleus 24.97 32.54
KRG89021 Soybean nucleus 26.58 31.31
KRH24914 Soybean nucleus 26.26 30.93
KRG96367 Soybean nucleus 22.4 30.87
KRH68102 Soybean nucleus 19.51 30.85
KRH59742 Soybean nucleus 27.76 30.19
KRH54110 Soybean nucleus 27.22 30.13
KRH41062 Soybean nucleus 27.44 30.08
KRH63855 Soybean nucleus 27.12 30.01
KRH26391 Soybean nucleus 25.4 29.66
Protein Annotations
EntrezGene:100813003MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90EMBL:ACUP02010784
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdInterPro:DNA-bd_pseudobarrel_sfEnsemblPlantsGene:GLYMA_17G256500GO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005886GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009734
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626
UniProt:I1MY19InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300EnsemblPlants:KRH05923ProteinID:KRH05923
ProteinID:KRH05923.1InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863
PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF10SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277
UniParc:UPI0002963449SEG:seg::::
Description
hypothetical protein
Coordinates
chr17:-:41032017..41037339
Molecular Weight (calculated)
103498.0 Da
IEP (calculated)
5.519
GRAVY (calculated)
-0.384
Length
933 amino acids
Sequence
(BLAST)
001: MMASVEEKIK TGGVGGGMVV GGQTLVAEMK LLKEMQEHSG VRKTLNSELW HACAGPLVSL PQVGSLVFYF PQGHSEQVAA STRRTATSQI PNYPNLPSQL
101: LCQVQNATLH ADKETDEIYA QMTLQPLNSE REVFPISDFG LKHSKHPSEF FCKTLTASDT STHGGFSVPR RAAEKLFPPL DYTIQPPTQE LVVRDLHDNT
201: WTFRHIYRGQ PKRHLLTTGW SLFVGSKRLR AGDSVLFIRD EKSQLRVGVR RVNRQQTTLP SSVLSADSMH IGVLAAAAHA AANRSPFTIF YNPRACPSEF
301: VIPLAKYRKS VFGTQVSVGM RFGMMFETEE SGKRRYMGTI VGISDVDPLR WPGSKWRNIQ VEWDEPGCGD KQNRVSVWEI ETPESLFIFP SLTSGLKRPL
401: PSGLLENEWG TLLTRPFIRV PENGTMELSN SIPNLYSEHM MKMLFKPQLI NNNGAFLSAM QQESAATRGP LQEMKTTLAA ENQMLLKNLH PQSIPDQPNA
501: LNMQSLLKND QPEKFHPLAK IDNHLPSGIV IDKPKLECEV LPDRVIDYPS MEGCNNEKVA VNPVNQQGLA TQLPFHNQNQ SPLLPQSSPW PMQPLIESSM
601: PHPQMIGMAQ ADSAMVNGLF PQLDIDEWLA YASSQPFAGQ NRPTGPFSDL QEHNSLQPQV VNPPLPSMNN EVWDHYVKNF KFLSQADQLT SICQPGMYGL
701: NGVPSSNNLR DLSAESNNQS EICVNVDASN SVGTTMVDPS TSSTILDEFC TMKDGEFQNP QDCMVGNLSS SQDVQSQITS ASLAESHAYP LRDIPDNSGG
801: TSSSHVDFDE SSFLQNNSWQ QVPAPIRTYT KVQKAGSVGR SIDVTTFKNY EELIRAIECM FGLDGLLNDT KGSGWKLVYV DYESDVLLVG DDPWEEFVGC
901: VRCIRILSPS EVQQMSEEGM KLLNSGALQG MNV
Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.