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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER90734
EER90896
EER93778
EER98076
EES00605
EES02172
EES06968
EES10850
EES13038
EES16315
EES17334
EES17832
KXG19391
KXG22376
KXG31308
KXG33336
OQU84670
OQU86163
OQU91311

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19850.1 EER90896 AT1G04250.1 21734647
AT1G19850.1 EES17334 AT1G04250.1 21734647
AT1G19850.1 OQU91311 AT1G04250.1 21734647
AT1G19850.1 EES13038 AT1G19850.1 14729917
AT1G19850.1 EES13038 AT1G19850.1 21734647
AT1G19850.1 EES13038 AT1G19850.1 22096563
AT1G19850.1 EES13038 AT1G19850.1 24485461
AT1G19850.1 EES06968 AT1G59750.1 22096563
AT1G19850.1 EES10850 AT1G59750.1 22096563
AT1G19850.1 EES00605 AT3G17600.1 21734647
AT1G19850.1 EER90896 AT3G23050.1 21734647
AT1G19850.1 EES17334 AT3G23050.1 21734647
AT1G19850.1 OQU91311 AT3G23050.1 21734647
AT1G19850.1 EES02172 AT3G61830.1 22096563
AT1G19850.1 EER90734 AT4G14560.1 14729917
AT1G19850.1 EER93778 AT4G14560.1 14729917
AT1G19850.1 EER98076 AT4G14560.1 14729917
AT1G19850.1 EES16315 AT4G14560.1 14729917
AT1G19850.1 EER90734 AT4G14560.1 22096563
AT1G19850.1 EER93778 AT4G14560.1 22096563
AT1G19850.1 EER98076 AT4G14560.1 22096563
AT1G19850.1 EES16315 AT4G14560.1 22096563
AT1G19850.1 EER90734 AT4G14560.1 9342315
AT1G19850.1 EER93778 AT4G14560.1 9342315
AT1G19850.1 EER98076 AT4G14560.1 9342315
AT1G19850.1 EES16315 AT4G14560.1 9342315
AT1G19850.1 KXG19391 AT4G32280.1 21734647
AT1G19850.1 KXG31308 AT4G32280.1 21734647
AT1G19850.1 EES17832 AT5G25890.1 21734647
AT1G19850.1 KXG22376 AT5G25890.1 21734647
AT1G19850.1 KXG33336 AT5G25890.1 21734647
AT1G19850.1 OQU84670 AT5G25890.1 21734647
AT1G19850.1 OQU86163 AT5G25890.1 21734647
AT1G19850.1 EES17832 AT5G25890.1 22096563
AT1G19850.1 KXG22376 AT5G25890.1 22096563
AT1G19850.1 KXG33336 AT5G25890.1 22096563
AT1G19850.1 OQU84670 AT5G25890.1 22096563
AT1G19850.1 OQU86163 AT5G25890.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d001945_P002 Maize nucleus 90.8 90.61
Zm00001d026540_P002 Maize nucleus 91.23 89.99
Os04t0664400-01 Rice nucleus 76.85 79.02
TraesCS2D01G491200.2 Wheat nucleus 79.39 78.64
TraesCS2B01G519200.2 Wheat nucleus 79.28 78.53
TraesCS2A01G491000.1 Wheat nucleus 79.07 78.32
HORVU2Hr1G109650.18 Barley nucleus 78.12 77.22
Bra025775.1-P Field mustard nucleus 34.04 68.51
GSMUA_Achr1P20040_001 Banana nucleus 46.09 55.75
GSMUA_Achr6P36980_001 Banana nucleus 46.93 51.75
Bra016492.1-P Field mustard nucleus 41.75 47.25
CDX83741 Canola nucleus 42.18 47.16
CDY62586 Canola nucleus 42.07 47.04
CDY61164 Canola nucleus 42.39 46.57
CDY01393 Canola nucleus 42.49 46.47
CDY29392 Canola nucleus 43.02 46.46
Bra012190.1-P Field mustard nucleus 42.49 46.37
AT1G19850.1 Thale cress nucleus 43.97 46.12
CDY39348 Canola nucleus 42.49 45.73
KRH17404 Soybean nucleus 44.93 45.7
KRH05923 Soybean nucleus 45.03 45.66
VIT_18s0001g13930.t01 Wine grape nucleus 45.67 45.33
Solyc04g081240.2.1 Tomato nucleus 43.45 44.19
PGSC0003DMT400009660 Potato nucleus 43.13 43.92
GSMUA_Achr1P20000_001 Banana nucleus 45.03 43.87
KXG27404 Sorghum nucleus 33.83 39.07
GSMUA_Achr1P20010_001 Banana plasma membrane, plastid 42.81 38.57
EES17392 Sorghum nucleus 34.99 36.98
EER90218 Sorghum nucleus 35.62 36.67
EES04575 Sorghum nucleus 35.2 36.55
EES06968 Sorghum nucleus 24.74 34.82
KXG19536 Sorghum nucleus 37.31 33.52
EES10850 Sorghum nucleus 23.36 33.43
EES15359 Sorghum nucleus 35.2 30.41
EES02172 Sorghum nucleus 21.99 30.23
EER90336 Sorghum nucleus 36.68 29.94
OQU83539 Sorghum nucleus 25.69 29.82
EES17013 Sorghum nucleus 26.43 29.8
OQU84350 Sorghum nucleus 32.98 29.16
KXG34038 Sorghum nucleus 24.95 29.14
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90EntrezGene:8082556InterPro:AUX/IAA_dom
InterPro:Auxin_respInterPro:B3_DNA-bdUniProt:C5Y9Z0InterPro:DNA-bd_pseudobarrel_sfEnsemblPlants:EES13038ProteinID:EES13038
ProteinID:EES13038.1GO:GO:0000003GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009733GO:GO:0009734
GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009908GO:GO:0009942GO:GO:0009987
GO:GO:0010051GO:GO:0010305GO:GO:0016020GO:GO:0042802GO:GO:0044212GO:GO:0048364
GO:GO:0048507InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300ProteinID:OQU82516.1InterPro:PB1_dom
PFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384
PANTHER:PTHR31384:SF10SMART:SM01019EnsemblPlantsGene:SORBI_3006G255300SUPFAM:SSF101936SUPFAM:SSF54277unigene:Sbi.12926
UniParc:UPI0001A87544RefSeq:XP_002448710.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr6:-:59260067..59265276
Molecular Weight (calculated)
103755.0 Da
IEP (calculated)
6.213
GRAVY (calculated)
-0.462
Length
946 amino acids
Sequence
(BLAST)
001: MASAQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTKKIPNSR IPNYPSLPSQ LLCQVHNITL
101: HADKETDEIY AQMTLQPVHS ETDVFPIPSL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR
201: GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLVG VRRATRQQPA LSSSVLSTDS MHIGVLAAAA HAASSGGSFT IYYNPRTSPS PFVIPLARYN
301: KATYLQPSVG MRFAMMFETE ESIKRRCTGT IVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSLWD IETPENMVFP SPLNSKRQCL PSYAVPGLQI
401: GSVNMSSIPR AQGSPFGNLQ QMPGSGSDLA LLLLNQSGQN LGSPIACQQS SFSSIIQNAK HSYFPPSTFG ASTGSMKQET MPSNEAPQQL NALGIQKGDQ
501: VSCEVQPGID SISAREMSVK PRGPRSTDSY SSQSISDQNG KGEPRTKSRR SKKSSSHKTI SDKSELSSLP SQICDKQRHG SEPTLVDCGA EQATCGNIED
601: SSGAPTRGDF AGELQVLEVE QHELLSPPKL ESSKSPDGGK SVSSFPNQGC FSQFLEGLDW MIPPSYYQDS NGIQSATASD NIFNPSEGIP SAMNTDGMEA
701: FQTSCLSECF PNSIQEFINS PDINTLTFMS PEMQHLDAQH DGSNLPSTSN SYVQMSFSEE SQSASLSGLH MEAIHINSSC SQPLATGSFD AGTFSKLSNM
801: KECQALPLQE IHNGSMGTPS CSMDAAAEYS MDRSVKPMKP PVRTYTKVQK LGSVGRSIDV TRFRDYHELR SAIACMFGLQ GKLEHPGGSD WKLVYVDYEN
901: DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGVHVLN DCIQIA
Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.