CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00093

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	EES00093	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011953_P002	Maize	nucleus	92.59	93.05
Zm00001d042267_P003	Maize	nucleus	91.85	90.95
Os01t0927600-01	Rice	nucleus	78.89	79.08
TraesCS3D01G434700.1	Wheat	nucleus	77.65	79.02
TraesCS3B01G475800.1	Wheat	nucleus	77.65	79.02
TraesCS3A01G442000.1	Wheat	nucleus	77.65	78.92
TraesCS3B01G486000.2	Wheat	nucleus	73.95	72.52
TraesCS3A01G449300.3	Wheat	nucleus	73.33	71.65
HORVU3Hr1G096410.4	Barley	nucleus, plastid	70.74	71.27
HORVU3Hr1G096510.3	Barley	plastid	71.98	69.9
HORVU3Hr1G097200.10	Barley	nucleus	72.35	69.35
TraesCS3D01G442000.7	Wheat	nucleus	73.33	67.04
VIT_01s0244g00150.t01	Wine grape	nucleus	51.11	53.84
CDX87230	Canola	nucleus	53.21	52.05
KRH59742	Soybean	nucleus	54.94	51.86
Solyc12g042070.1.1	Tomato	nucleus	52.84	51.69
KRH41062	Soybean	nucleus	53.95	51.35
VIT_17s0000g00320.t01	Wine grape	nucleus	54.57	51.28
KRH63855	Soybean	nucleus	53.33	51.25
OQU83539	Sorghum	nucleus	51.48	51.17
PGSC0003DMT400036765	Potato	nucleus	53.33	51.12
Solyc03g118290.2.1	Tomato	nucleus	53.33	51.06
PGSC0003DMT400037454	Potato	nucleus	52.22	51.03
KRH54110	Soybean	nucleus	53.09	51.01
AT5G62000.1	Thale cress	nucleus	53.95	50.87
CDY67247	Canola	nucleus	53.33	50.76
Bra010048.1-P	Field mustard	nucleus	53.21	50.65
CDY00245	Canola	nucleus	53.21	50.65
CDX86939	Canola	nucleus	52.72	50.24
Bra035910.1-P	Field mustard	nucleus	53.7	48.99
EES06968	Sorghum	nucleus	40.49	48.81
CDY16798	Canola	nucleus	52.84	48.8
EES10850	Sorghum	nucleus	39.14	47.96
EES17013	Sorghum	nucleus	49.26	47.56
EES02172	Sorghum	nucleus	33.21	39.1
KXG27404	Sorghum	nucleus	30.49	30.16
EES04575	Sorghum	nucleus	31.98	28.43
EER90218	Sorghum	nucleus	31.98	28.18
EES17392	Sorghum	nucleus	31.11	28.16
EES13038	Sorghum	nucleus	29.14	24.95
KXG19536	Sorghum	nucleus	32.35	24.88
EES15359	Sorghum	nucleus	32.72	24.2
EER90336	Sorghum	nucleus	32.1	22.43
OQU84350	Sorghum	nucleus	29.14	22.06

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1B6Q7Z0	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG34038	ProteinID:KXG34038	ProteinID:KXG34038.1
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF8	SMART:SM01019	EnsemblPlantsGene:SORBI_3003G411900	SUPFAM:SSF101936	SUPFAM:SSF54277
unigene:Sbi.3872	UniParc:UPI00081ADDDD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:71918718..71925752

Molecular Weight (calculated)

90779.4 Da

IEP (calculated)

6.421

GRAVY (calculated)

-0.650

Length

810 amino acids

Sequence
(BLAST)

001: MPPAAAMALP SQAPSNSGDP LYPELWRACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VAGNQMRLYD LPSKLLCRVL NVELKAETDT DEVYAQIMLM
101: PEPEQTDVAA EKASSASAAS PRPAVRSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT QSPPTQELVA KDLHGMEWRF RHIFRGQPRR HLLQSGWSVF
201: VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQLSNVPSSV ISSQSMHLGV LATAWHAINT KSMFTVYYKP RTSPSEFIIP YDQYMESVKN NYSIGMRFRM
301: RFEGEEAPEQ RFTGTIVGCE NLDPLWPDSS WRYLKVRWDE PSTIPRPDRV SPWKIEPASS PPVNPLPLSS RVKRPRQNAP PPSPEASVLT KESAAKIDID
401: SAQTQHQNSV LQGQEQMTLR NNLTESNDSD STVQKPMMWS PSPNGKAHTN FQQRPAMDSW MPMGRRETDF KDSRSAFKDA RTASQSFRDT QGFFMQAYDD
501: NHHRLSFNNQ FQDQGSAHRF ADPYFYMAQQ PSLTVESSTR TQTANNDLRF WGDQNSIYGN PGDQQQQGFS FGQNPSSWLN QPFPQVEQPR VVRPHATVAP
601: FDLEKTREGS GFKIFGFQVD TTSPSPAQLS SPLCAIREHV VQTRPSAPVN ELQPVQNECL PEGSVSTAGT ATENEKNIQQ AQPSSKDIQS KSQGASTRSC
701: TKVHKQGVAL GRSVDLSKFT DYDELKAELD KMFEFNGELV SANRSWQIVY TDNEGDMMLV GDDPWEEFCS IVRKIYIYTK EEVQKMNSKS SAPRKEEPLT
801: VGEGCAATNE

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.