CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00093

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	EES00093	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041056_P019	Maize	nucleus	88.8	88.27
Os12t0479400-02	Rice	nucleus	72.59	72.41
OQU83539	Sorghum	nucleus	61.5	63.31
GSMUA_Achr6P08090_001	Banana	nucleus	55.66	56.67
GSMUA_Achr10P...	Banana	nucleus	54.11	55.1
GSMUA_Achr6P16450_001	Banana	nucleus	55.18	53.04
VIT_01s0244g00150.t01	Wine grape	nucleus	47.91	52.28
VIT_17s0000g00320.t01	Wine grape	nucleus	53.4	51.97
GSMUA_AchrUn_...	Banana	nucleus	54.11	51.36
PGSC0003DMT400037454	Potato	nucleus	50.54	51.15
PGSC0003DMT400036765	Potato	nucleus	51.49	51.12
Solyc03g118290.2.1	Tomato	nucleus	51.37	50.95
Solyc12g042070.1.1	Tomato	nucleus	50.18	50.85
EES06968	Sorghum	nucleus	39.93	49.85
KRH41062	Soybean	nucleus	50.42	49.71
KRH54110	Soybean	nucleus	49.94	49.7
KRH59742	Soybean	nucleus	50.54	49.42
KXG34038	Sorghum	nucleus	47.56	49.26
KRH63855	Soybean	nucleus	49.46	49.23
EES10850	Sorghum	nucleus	38.5	48.87
CDX87230	Canola	nucleus	48.15	48.79
CDY67247	Canola	nucleus	49.23	48.53
CDX86939	Canola	nucleus	48.75	48.12
AT5G62000.1	Thale cress	nucleus	49.11	47.96
CDY00245	Canola	nucleus	48.63	47.94
Bra010048.1-P	Field mustard	nucleus	48.63	47.94
Bra035910.1-P	Field mustard	nucleus	48.51	45.83
CDY16798	Canola	nucleus	47.68	45.61
EES02172	Sorghum	nucleus	30.63	37.35
KXG27404	Sorghum	nucleus	29.56	30.28
EES17392	Sorghum	nucleus	31.7	29.72
EER90218	Sorghum	nucleus	31.7	28.94
EES04575	Sorghum	nucleus	30.99	28.54
EES13038	Sorghum	nucleus	29.8	26.43
KXG19536	Sorghum	nucleus	29.8	23.74
EER90336	Sorghum	nucleus	32.3	23.38
EES15359	Sorghum	nucleus	30.51	23.38
OQU84350	Sorghum	nucleus	29.32	22.99

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:8064058	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5YNM8	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES17013	ProteinID:EES17013
ProteinID:EES17013.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF40	SMART:SM01019	EnsemblPlantsGene:SORBI_3008G096000	SUPFAM:SSF101936
SUPFAM:SSF54277	unigene:Sbi.10263	UniParc:UPI0001A883E2	RefSeq:XP_002443175.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:45231678..45237932

Molecular Weight (calculated)

92458.9 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.648

Length

839 amino acids

Sequence
(BLAST)

001: MAAAAPAAGG GGGAEAGCGG GGGKDPLFVE LWKACAGPLS SVPPLGEKVY YFPQGHIEQV EASTNQIAEQ QGTPLYNLPW KIPCKLMNIE LKAEPDTDEV
101: YAQLTLLPDK KQDENTSTTV ENEEAEEEVV PHAPPTNEGP RIHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSQHP PNQELVAKDL HGIEWRFRHI
201: FRGQPRRHLL QSGWSVFVSA KRLVAGDAFI FLRGENGELR VGVRRALRHQ TTIPSSVISS HSMHLGVLAT AWHAVNTGSM FTVYYKPRTS PAEFVVSRDR
301: YYESLKRNYS IGMRFKMRFE GEEAAEQRFT GTIVGIGASD PSGWADSKWR SLKVRWDEAS SVPRPERVSP WQIEPAISPS PVNPLPVRFK RSRSSVNASP
401: SDVPTVSREV ASKVMAESQQ SNLPRALHNQ GRTQLTGRYH DSSDVKTAQD LTMWSSGTEQ QRNNIAAQTK RSLEGWTQSR TPEGYNQLFS AFQPLKDTHN
501: PLCTFPSQIS GTRSNTWDTA DARYPAQQAN HNMLHGTWPF MPHSSGFRTN QQNYLVMPEA AKFTGKSAFT SLQGHGTDQC STGWFGHIES SSRTDHASSS
601: SIRPQPLVIG NDVQKTKGTS FKLFGIPLGS PEKSEPLVSP PSVAYDGKLQ TSPSEKGNQL DIVGVDNCSD PSKTVKPFDG PQSDSITENN QPCPEATQNI
701: QNKVQSSSTR SCKKVHKQGS ALGRSIDLTK FTCYDELIAE LDQMFDFDGE LKNPCKNWLV VYTDNEGDIM LVGDDPWNEF CDMVHKIFIY TREEVERMNP
801: GALNSRSEDS LSDSQGRGLA SKEPPRGGPS TSTPNSESC

Best Arabidopsis Sequence Match ( AT5G62000.4 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVDGGRL VETGEQNGMM GLR

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.