CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053819_P002	Maize	nucleus	94.51	93.69
KRH58711	Soybean	nucleus	37.65	87.28
Os02t0164900-01	Rice	nucleus	83.97	84.25
TraesCS6A01G138600.4	Wheat	nucleus	82.33	80.82
TraesCS6D01G127600.2	Wheat	nucleus	82.22	80.8
TraesCS6B01G167100.1	Wheat	nucleus	82.11	80.69
HORVU6Hr1G026730.9	Barley	nucleus	81.67	80.09
EER90218	Sorghum	nucleus	80.13	79.43
GSMUA_Achr5P00590_001	Banana	nucleus	69.15	69.31
GSMUA_Achr11P...	Banana	nucleus	62.68	68.88
VIT_10s0003g04100.t01	Wine grape	nucleus	67.4	67.62
GSMUA_Achr6P19850_001	Banana	nucleus	62.24	66.32
KRH11131	Soybean	nucleus	64.87	65.81
KRH21113	Soybean	nucleus	64.54	65.62
CDY02285	Canola	nucleus	62.02	64.72
CDY12048	Canola	nucleus	59.82	64.34
Bra010776.1-P	Field mustard	nucleus	58.73	64.3
CDX90245	Canola	nucleus	60.04	64.2
KRH42603	Soybean	nucleus	63.78	64.2
CDY09598	Canola	nucleus	61.03	63.91
AT1G30330.3	Thale cress	nucleus	63.34	61.71
EES17392	Sorghum	nucleus	60.48	61.56
KXG27404	Sorghum	nucleus	54.45	60.56
KXG19536	Sorghum	nucleus	46.65	40.36
EES10850	Sorghum	nucleus	26.89	37.07
EES06968	Sorghum	nucleus	27.11	36.76
EES13038	Sorghum	nucleus	36.55	35.2
EES15359	Sorghum	nucleus	42.04	34.98
EER90336	Sorghum	nucleus	43.8	34.43
OQU84350	Sorghum	nucleus	39.3	33.46
KXG34038	Sorghum	nucleus	28.43	31.98
EES02172	Sorghum	nucleus	23.71	31.4
EES17013	Sorghum	nucleus	28.54	30.99
OQU83539	Sorghum	nucleus	27.33	30.55

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	UniProt:C5XVH8	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES04575	ProteinID:EES04575	ProteinID:EES04575.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF22	SMART:SM01019	EnsemblPlantsGene:SORBI_3004G051900	SUPFAM:SSF101936	SUPFAM:SSF54277
unigene:Sbi.20720	UniParc:UPI0001A8556C	RefSeq:XP_002451599.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:4197276..4203457

Molecular Weight (calculated)

100423.0 Da

IEP (calculated)

5.657

GRAVY (calculated)

-0.432

Length

911 amino acids

Sequence
(BLAST)

001: MKLSPSASGG LQDQPGSPEE AEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV
101: YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIATDLH GNEWKFRHIF RGQPKRHLLT
201: TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPMAKY VKAVYHTRIS
301: VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGGRDDGLT
401: SSLMWLRDRA NPGFQSLNFS GLGTSPWMQP RLDNSLLGLQ SDMYQTIAAA AALQSTTKQV SPSVMQFQQP QNIVDRSALL SSQILQQVQP QFQQIYPQNL
501: NENKIQGQTE YLQQQLQRCQ SFNEQKPPLH SQQQEQESQQ QQCVQTPQDQ QMQQQKHLHN FHSLPDALSA FSQLSSATHS PSSTLQTVPA FSHQQNFPDT
601: NISSLSPSSG SSMHGMLGQL PSEAASSLPC VAINTPVSVS DPWSSKRVAV ESVNPSRPHV VSPQIEQLDM ASCNMPQSSA LAPLPGRECL VDQDGNSDPQ
701: NHLLFGVNID SQSLLMQGGI PSLQNDNSSG TIPYSTSNFL SSSQNDFPLN QSLHSAGCLD ESGYAPCAEN SEQANQQFAT FVKVYKSGNV GRLLDITRFS
801: SYDELRSEVG RLFGLEGQLE DPLRSGWQLV FVDREDDVLL VGDDPWQEFV NSVSCIKILS PEEVQQMGKP GIQLLSSAPS RRLSNGCDSY ASMQESRSLS
901: TGMAPVGSVE F

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.