Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G127600.2 | Wheat | nucleus | 93.86 | 94.07 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 93.54 | 93.64 |
| TraesCS6B01G167100.1 | Wheat | nucleus | 93.43 | 93.64 |
| KRH58711 | Soybean | nucleus | 36.06 | 85.24 |
| Os02t0164900-01 | Rice | nucleus | 82.35 | 84.25 |
| EES04575 | Sorghum | nucleus | 80.09 | 81.67 |
| Zm00001d053819_P002 | Maize | nucleus | 79.22 | 80.09 |
| HORVU7Hr1G106280.1 | Barley | nucleus | 77.5 | 76.76 |
| GSMUA_Achr11P... | Banana | nucleus | 60.6 | 67.91 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 65.88 | 67.33 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 65.12 | 66.63 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 60.28 | 65.5 |
| KRH21113 | Soybean | nucleus | 62.54 | 64.84 |
| KRH11131 | Soybean | nucleus | 62.65 | 64.81 |
| CDY12048 | Canola | nucleus | 58.23 | 63.87 |
| Bra010776.1-P | Field mustard | nucleus | 57.16 | 63.82 |
| CDY02285 | Canola | nucleus | 59.96 | 63.8 |
| CDX90245 | Canola | nucleus | 58.45 | 63.73 |
| CDY09598 | Canola | nucleus | 59.1 | 63.1 |
| KRH42603 | Soybean | nucleus | 60.82 | 62.43 |
| AT1G30330.3 | Thale cress | nucleus | 61.46 | 61.07 |
| HORVU5Hr1G009650.20 | Barley | nucleus | 58.13 | 60.61 |
| HORVU2Hr1G121110.32 | Barley | nucleus | 51.88 | 57.52 |
| HORVU7Hr1G033820.5 | Barley | nucleus | 43.38 | 37.8 |
| HORVU2Hr1G076920.3 | Barley | nucleus | 26.7 | 37.13 |
| HORVU7Hr1G051930.4 | Barley | nucleus | 40.69 | 34.9 |
| HORVU6Hr1G020330.30 | Barley | nucleus | 42.2 | 34.36 |
| HORVU2Hr1G109650.18 | Barley | nucleus | 34.66 | 33.65 |
| HORVU7Hr1G096460.7 | Barley | mitochondrion, nucleus, vacuole | 41.66 | 32.2 |
| HORVU3Hr1G097200.10 | Barley | nucleus | 27.34 | 30.06 |
| HORVU3Hr1G096410.4 | Barley | nucleus, plastid | 25.4 | 29.35 |
| HORVU3Hr1G096510.3 | Barley | plastid | 25.83 | 28.78 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 23.79 | 27.62 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | UniProt:A0A287TNV8 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU6Hr1G026730 | EnsemblPlants:HORVU6Hr1G026730.9 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF22 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000B46B8EF | SEG:seg |
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287TNV8]
Coordinates
chrchr6H:+:103063440..103069054
Molecular Weight (calculated)
102664.0 Da
IEP (calculated)
6.078
GRAVY (calculated)
-0.489
Length
929 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLSPSAGGG CLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ VSVSTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE
101: VYAQMTLQPL SPQELKDPFL PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL HGNEWKFRHI FRGQPKRHLL
201: TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGTSGKED
401: DLTSSLMWLR DGANPGFQSF NFGGLGMSPW MQPRMDNSLL GMQPDMYQAI SAASFQNTAK QVSPALLQFQ QPQNIAGRSA LLSSQILQQV QPQFQEMHHQ
501: NINGSAIQGH NQSEYLQQQL QRCQSFNGQK SPPPQQQHQE SHHQQQQQQQ SQCMQTPQHQ QMQEQKQSPD FQSVPNALSV FSQLSSTTQS PPSTLPAVSA
601: FSQQQNFHDR SISSLSPSHV PSMHGTLRPF PSEAGSNLQG VPRTTPVPVS DPWSSKRVAM ESVVPCSSHV SSSHTQQLDS APSNIAQSSS LAPLPGRECL
701: VDQDGSSDHQ NHLLFGVNID SQSLLMQGGI PSLEEDNDCI ASLQDDNGSS TIPYSTCNFL SPSQSDFPLN EALTSSGCLD ESGYIPFSEN SDQVNQPPAA
801: FVKIYRSGTF GRLLDITKFS SYHELRNEVG RLFGLEGQLE ERSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKQGI DLLSSAPARR
901: LGNSCDNYVG RQESRSLSTV IASVGSAEF
101: VYAQMTLQPL SPQELKDPFL PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL HGNEWKFRHI FRGQPKRHLL
201: TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGTSGKED
401: DLTSSLMWLR DGANPGFQSF NFGGLGMSPW MQPRMDNSLL GMQPDMYQAI SAASFQNTAK QVSPALLQFQ QPQNIAGRSA LLSSQILQQV QPQFQEMHHQ
501: NINGSAIQGH NQSEYLQQQL QRCQSFNGQK SPPPQQQHQE SHHQQQQQQQ SQCMQTPQHQ QMQEQKQSPD FQSVPNALSV FSQLSSTTQS PPSTLPAVSA
601: FSQQQNFHDR SISSLSPSHV PSMHGTLRPF PSEAGSNLQG VPRTTPVPVS DPWSSKRVAM ESVVPCSSHV SSSHTQQLDS APSNIAQSSS LAPLPGRECL
701: VDQDGSSDHQ NHLLFGVNID SQSLLMQGGI PSLEEDNDCI ASLQDDNGSS TIPYSTCNFL SPSQSDFPLN EALTSSGCLD ESGYIPFSEN SDQVNQPPAA
801: FVKIYRSGTF GRLLDITKFS SYHELRNEVG RLFGLEGQLE ERSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKQGI DLLSSAPARR
901: LGNSCDNYVG RQESRSLSTV IASVGSAEF
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.