Factsheet for HORVU5Hr1G009650.20

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G039800.1	Wheat	nucleus	96.97	96.97
TraesCS5A01G038300.2	Wheat	nucleus	97.31	96.44
TraesCS5D01G045700.2	Wheat	nucleus	97.08	96.11
KRH58711	Soybean	nucleus	38.38	87.02
EES17392	Sorghum	nucleus	79.46	79.11
Os12t0613700-01	Rice	nucleus	78.56	77.86
Zm00001d031064_P003	Maize	nucleus	77.78	77.26
Zm00001d041497_P005	Maize	nucleus	76.99	77.25
GSMUA_Achr5P26580_001	Banana	nucleus	57.24	63.2
GSMUA_Achr3P23290_001	Banana	nucleus	57.91	62.93
VIT_10s0003g04100.t01	Wine grape	nucleus	63.41	62.22
KRH11131	Soybean	nucleus	61.5	61.02
KRH21113	Soybean	nucleus	61.05	60.71
CDY02285	Canola	nucleus	59.48	60.71
CDY12048	Canola	nucleus	57.46	60.45
Bra010776.1-P	Field mustard	nucleus	56.23	60.22
CDX90245	Canola	nucleus	57.58	60.21
KRH42603	Soybean	nucleus	60.83	59.89
GSMUA_Achr11P...	Banana	nucleus	61.28	59.8
CDY09598	Canola	nucleus	58.25	59.66
HORVU7Hr1G106280.1	Barley	nucleus	61.62	58.53
AT1G30330.3	Thale cress	nucleus	61.17	58.29
HORVU6Hr1G026730.9	Barley	nucleus	60.61	58.13
HORVU2Hr1G121110.32	Barley	nucleus	51.85	55.13
HORVU7Hr1G033820.5	Barley	nucleus	43.77	36.59
HORVU2Hr1G076920.3	Barley	nucleus	26.37	35.18
HORVU2Hr1G109650.18	Barley	nucleus	35.91	33.44
HORVU7Hr1G051930.4	Barley	nucleus	39.62	32.59
HORVU6Hr1G020330.30	Barley	nucleus	41.53	32.43
HORVU3Hr1G097200.10	Barley	nucleus	28.73	30.3
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	40.74	30.2
HORVU3Hr1G096410.4	Barley	nucleus, plastid	26.49	29.35
HORVU3Hr1G096510.3	Barley	plastid	26.82	28.66
HORVU3Hr1G032230.6	Barley	nucleus, plastid	24.92	27.75

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G009650
EnsemblPlants:HORVU5Hr1G009650.20	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0XXL5	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF67	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000393C18D	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:M0XXL5]

Coordinates

chrchr5H:-:23671332..23677690

Molecular Weight (calculated)

98200.3 Da

IEP (calculated)

6.151

GRAVY (calculated)

-0.451

Length

891 amino acids

Sequence
(BLAST)

001: MERKLSMSEM PQPLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ
101: MTLQPLSPEE QKEPFLPIEL GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE WKFRHIFRGQ PKRHLLTTGW
201: SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM
301: RFRMLFETEE SSVRRYMGTI TTISDLDSAR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF
401: ARYSSLMWLG DGDRGAQSLN FQGVGASPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG GLNSVYANHV LQQMQYQAQQ
501: SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPSQQGH QVIQQSHQEM QQQLSSGCHR ISDVDSSMSG SESASQSQPP FYQQNLLEGN NDPSMHLHNG
601: FRNFSSQDAS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSVQPKHE NVNHQSNISH FAGTLAPQSA RDSSSVQAYV ANVDNHFLSS SFAFQDGMAG
701: ARGGSSSGTV SMAIPLLRYS GEDLPPADTL ATSSCLGESG TFNSLDNMCG VDPSQDGIFV KVCKSGSPGR SLDITKFSSY YELRSELEHL FGLEGQLEDP
801: VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSPQ EVQRMVRGGE GLLSSAPGAR MAQGDVCDGY SGGHDLQNLT GSMASVPSLD Y

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.